PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG015005.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 555aa    MW: 61724.9 Da    PI: 9.7081
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG015005.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.81e-0691113123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C++C+k F+r  nL+ H + H
  CCG015005.1  91 YVCEICNKEFRRYQNLQLHRKGH 113
                  9*******************988 PP
2zf-C2H215.26.4e-05167189123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC  C+k +  +s+ k H++t+
  CCG015005.1 167 WKCDECSKKYAVQSDWKAHQKTC 189
                  58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.26E-683113No hitNo description
Gene3DG3DSA:3.30.160.609.4E-690113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.0E-490113IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.80391113IPR007087Zinc finger, C2H2
SMARTSM003550.001591113IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.5E-5155188IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.3E-5163204No hitNo description
SMARTSM0035586167187IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MKGASLQEIL EKKSNSFKKS SNNRHKIISM AQTHQDVQPL LAAMGLSPNS NTSRLRRKEI  60
YEELQAKSTL HVDTAEVVAL SPTTHMETNR YVCEICNKEF RRYQNLQLHR KGHNLPWKLW  120
QRTATEVRKR VCICPELTCV HHNPARSIGD LTGIKKHFSR KNAEKKWKCD ECSKKYAVQS  180
DWKAHQKTCG TKEYKCDCGT IFSRRDCFIT HRAFCDALAE ENNGVNQGHS MPLSTSTSIS  240
IGMPYFNSFD PKNSLKYLPQ ELVPIPSKSM NMAGGMLSSS SGTLFGSPRS ISSTSSLQLS  300
SKGSSGLHYL QDNKNGCQIS ASAHMSAAAM LKKAAQMGAT ASNSINSPVM QKSFASSMAG  360
PHDQLSSIKP KTYGRIQQHN NSYGHLPLLA SGQTGMVGIN GVGGFSNQPL QRGPQETSQI  420
FDTSVTGNSA MNDMEMFTGV FMSNDQNPGF IRNMEQEVSG GSSLIHGRNT LMERNPTGPS  480
RFAGTYIEGG DMMNRDFMGV GEARPANFHD QRQQHRQRLE MEGMSQQQRM PMMNPFQQQP  540
SLRESAMEKP SIWDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-31164221461Zinc finger protein JACKDAW
5b3h_F7e-31164221461Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033580.10.0PREDICTED: zinc finger protein NUTCRACKER-like
TrEMBLA0A3N7FC770.0A0A3N7FC77_POPTR; Uncharacterized protein
STRINGPOPTR_0014s12720.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-86indeterminate(ID)-domain 2