PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG014800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 285aa MW: 32772.9 Da PI: 5.5882 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.5 | 1.6e-50 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrF P+deelv++yL kk++++++ ++ evd++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat++gyWkatgkd++vl+ ++ CCG014800.1 10 LPPGFRFYPSDEELVCHYLYKKITNEEVLK-GTLVEVDLHTCEPWQLPEVAKLNATEWYFFSFRDRKYATGFRTNRATTTGYWKATGKDRTVLDPtTR 106 79************************9655.78***************88888999**************************************9778 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 e+vg++ktLvfy++rap+g kt W+mhe+rle CCG014800.1 107 EVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 138 88***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.32E-60 | 8 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.64 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-27 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MGLRDIGATL PPGFRFYPSD EELVCHYLYK KITNEEVLKG TLVEVDLHTC EPWQLPEVAK 60 LNATEWYFFS FRDRKYATGF RTNRATTTGY WKATGKDRTV LDPTTREVVG MRKTLVFYRN 120 RAPNGIKTGW IMHEFRLETP HMHPKEDWVL CRVFHKCKTE DYNAKFSPQF MFETTTSSGT 180 VNLAASPLTE HQTLSCGYQQ MTSLSSNPPH QNQDQSSLLN LLQLSQDRNA NLNISTDISS 240 KVVDDQYAFL WDDMDLEETS LGDGALASNL EDMRFEIDHN SVVFI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-47 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-47 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-47 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-47 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-47 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 4e-47 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 4e-47 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 4e-47 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 4e-47 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 4e-47 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 4e-47 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 4e-47 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
4dul_A | 3e-47 | 9 | 156 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-47 | 9 | 156 | 16 | 165 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011004041.1 | 0.0 | PREDICTED: NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 1e-62 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | B9H8N9 | 0.0 | B9H8N9_POPTR; Uncharacterized protein | ||||
STRING | cassava4.1_033050m | 1e-158 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4381 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 5e-92 | NAC domain containing protein 74 |