PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG014779.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 544aa    MW: 59497.2 Da    PI: 6.6178
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG014779.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.81.9e-32246302259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  dDgynWrKYGqK++kgse+prsYY+Ct+ +Cpvkkkve+s+ d +++ei+Y+g+Hnh+
  CCG014779.1 246 DDGYNWRKYGQKPIKGSEYPRSYYKCTHLNCPVKKKVEHSS-DDQITEIIYKGQHNHD 302
                  8****************************************.99*************7 PP
2WRKY1079.2e-34430488159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver++ dpk+v++tYeg+Hnh+
  CCG014779.1 430 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASADPKAVITTYEGKHNHD 488
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.537240304IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.0E-29242303IPR003657WRKY domain
SuperFamilySSF1182906.28E-26243303IPR003657WRKY domain
SMARTSM007746.0E-37245303IPR003657WRKY domain
PfamPF031061.2E-25246302IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-37416490IPR003657WRKY domain
SuperFamilySSF1182901.57E-29422490IPR003657WRKY domain
PROSITE profilePS5081138.985425490IPR003657WRKY domain
SMARTSM007744.3E-40430489IPR003657WRKY domain
PfamPF031062.0E-26431488IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MAEKQENPTT AAPAKPTITL PPRPSMETLF SGGLSAGPVT LVSSFFADTP YPESDYPSFS  60
QLLAGAMASP IARPAFFTDN LIPNNNNTNT NTTTTAIPSS KENGINSYSN LGFKPSRPTN  120
LVVALSPLFT VLPGLSPSGL LDSPAFFSPG SPFGMSHQQA LVQVTAQAAL FAQSQMHMQV  180
QYQPSSVTAA KELLTQYPSF NPGEALQQQQ LMPPSTSDAQ NSMVEPAELS QSERKYQPPA  240
GDKPTDDGYN WRKYGQKPIK GSEYPRSYYK CTHLNCPVKK KVEHSSDDQI TEIIYKGQHN  300
HDQLNKLSRD GDDSNGSIHS QSKPEVVSQA HAGNVNEMTE TLPAHSVTTR DQESTQADLS  360
EPPGSSDNEE AGNAAVQEEE RGDDEPIPKR RQVWDVSLQI DVVTSEATLP HKTITEPKII  420
VQTRSEVDLL DDGYRWRKYG QKVVKGNPHP RSYYKCTSAG CNVRKHVERA SADPKAVITT  480
YEGKHNHDVP AARNSGHNTA NTNAAPFKPQ KVVAEKHPLL KGMDFGNNNQ RPLLLQLKED  540
KIAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-40246491878Probable WRKY transcription factor 4
2lex_A9e-40246491878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013412.10.0PREDICTED: probable WRKY transcription factor 3 isoform X1
RefseqXP_011015537.10.0PREDICTED: probable WRKY transcription factor 3 isoform X1
SwissprotQ9ZQ701e-137WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2K2ATH30.0A0A2K2ATH3_POPTR; Uncharacterized protein
STRINGPOPTR_0004s12000.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-116WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]