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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG014726.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C3H | ||||||||
Protein Properties | Length: 1609aa MW: 176958 Da PI: 5.9619 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.6 | 3.4e-06 | 1586 | 1609 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ f+++G+Ck G++C+F H+ CCG014726.1 1586 GQRVCK-FYESGYCKKGASCSFWHP 1609 6799**.8899***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 3.32E-8 | 101 | 170 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 5.4E-9 | 113 | 177 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SMART | SM00249 | 4.9E-7 | 125 | 171 | IPR001965 | Zinc finger, PHD-type |
CDD | cd15568 | 1.87E-19 | 125 | 170 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 126 | 186 | IPR019786 | Zinc finger, PHD-type, conserved site |
SMART | SM00151 | 0.001 | 354 | 437 | IPR019835 | SWIB domain |
Gene3D | G3DSA:1.10.245.10 | 1.6E-24 | 355 | 438 | IPR003121 | SWIB/MDM2 domain |
SuperFamily | SSF47592 | 2.18E-20 | 356 | 433 | IPR003121 | SWIB/MDM2 domain |
Pfam | PF02201 | 4.1E-14 | 361 | 432 | IPR003121 | SWIB/MDM2 domain |
SMART | SM00719 | 7.8E-50 | 496 | 606 | IPR004343 | Plus-3 domain |
PROSITE profile | PS51360 | 27.731 | 496 | 629 | IPR004343 | Plus-3 domain |
SuperFamily | SSF159042 | 4.18E-33 | 497 | 627 | IPR004343 | Plus-3 domain |
Pfam | PF03126 | 1.1E-22 | 501 | 604 | IPR004343 | Plus-3 domain |
SuperFamily | SSF55277 | 7.98E-15 | 841 | 896 | IPR003169 | GYF domain |
PROSITE profile | PS50829 | 13.852 | 844 | 898 | IPR003169 | GYF domain |
CDD | cd00072 | 1.93E-14 | 844 | 901 | No hit | No description |
SMART | SM00444 | 4.3E-15 | 845 | 900 | IPR003169 | GYF domain |
Gene3D | G3DSA:3.30.1490.40 | 6.3E-16 | 846 | 897 | IPR003169 | GYF domain |
Pfam | PF02213 | 3.0E-11 | 847 | 895 | IPR003169 | GYF domain |
SuperFamily | SSF90229 | 4.87E-6 | 1584 | 1608 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.286 | 1584 | 1609 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-4 | 1588 | 1608 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1609 aa Download sequence Send to blast |
MRQQQEDYRP SVPDATEEEA PLAFDNSVPT SDPMSTDQCQ TIPEMEDSQL VGATVSMVTA 60 DVDSSRRESV HIVPAVEVSN HVRIAENSTG KRKRGRPPRT QGKLGPPQAP PASSSQRKKR 120 DEEDVCFICF DGGSLVLCDR RGCPKAYHPA CIKRDEAFFR SKAKWNCGWH ICSSCQKASH 180 YMCYTCPYSL CKGCTKDADY LCVRGNKGFC GTCMRTIMLI ENMATANQEK VQVDFDDTTS 240 WEYLFKVYWI YLKAKLSLTI DELTKAKNPW KGDDLTKVKS AWKGAGVMAP KQEPSGEFCH 300 SNDNNGSFSD SFCGNLEIHA KRRKMEDQRK LHIEEHSLVM EKSRIDQLTQ LPDSTLWATK 360 ELLDFVSHMK NGDMSALSQF DVQSLLLEYI KRNDLRDPHQ KSHIFCDSRL IKLFGKEHVG 420 HFEMLKLLEY HFLVKEKSPV DETTLMGVSN AGGGQVEAAG NSDSQLVTGS DRRRKTRKKM 480 DDRGPQINGN PEDYAAIDVH NIRLLYLKRS LMENLMDDAG KFHEKVVGSF VRIRISGGDQ 540 KQDMYRLVQV VGIGKAAASY KVGTKTTDDM LEILNLDKKE VISIDGISNQ DFSEGECKRL 600 RQSIKCGLIK RLTVGEIQKR AMAIQDAKVR DRLEEEILRL NHLRDRASEK GHGKEYPLLE 660 CVEKLELLKS PEERQRRLLE IPDVHADPNM NPSYDSEEDS GESHKKKQGD HARPRNSSAA 720 RNGAVLNSSM GGGDVLSDRG NMGQNLATAS EQGRDTYTTS YVDRDGTNVV HVRVSESMQT 780 QGGEQVPNSQ NAPKNWVAST GSMTDDWKSQ SIVQCGSYSG VVSPNLPPPL SIGREQLVDD 840 MEMDKLWHYQ DPTGKTQGPF AMADLRKWST RGLFPRGLRV WKINEKPDDS IPLTDALFGR 900 FHKGPALPDN SYLLAQEAIV ASDKDKRHEF DMHQSTDASL VDKKNMDHWK SVQNNASVNC 960 NDNDALLKSN ALSIHSSSWT TGADAIIPNN GPAQLALQLL ELSKGCKSWS DQSQICSSLS 1020 SLPTSGKIGE IPLPQAKEEH EDEKRSYDPS YVNGNSLKTP EGKNNIGKSE DKQADSESYS 1080 NQSSGQNWRP PIKSSSGWDS KPAFVSGDKS VETSQKNEEI DFFDLPSPTP KQHLKDLKGH 1140 TAENKHSISS KLPVLDSGCS WSTASSLVVG GATLARVAGE WGGYSPAPVK PVEEWDSNHV 1200 SASSLKPTDG GSDHASTQTP DSGPLTHSPS THPVIDASDW QPIIPEPTEF CSLVDESVSD 1260 LLAEVEAMES LGGLPSPTSK LQSAEELTRG YDDDCFSPVD EFNPAPDPGK SDAFSSTADI 1320 QIPSHLTVVS EALVPCHMPS EPTVMDKQLA VSPMPSQLTA VNESLGISCT PSQSTITDEP 1380 LERSQKPSQS TLIDEPLGLS QIDVPNPQKS FSEHSSTSPE VEGNTKPNDV PVNEWEKGSE 1440 IQPLAPLAGN QGESGADIQS TTPSTASQLE AGSNAQQPTP SHEDAGQGTT KEREAQGNTN 1500 MVWGNGHGTG QQHARTNGAN SAGNPGGWGS QPRYGGDRFS GPRDHRNNFQ GRDRDSGFGR 1560 DRSSWNKQPL HGGGNGASTY RPPPKGQRVC KFYESGYCKK GASCSFWHP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4gnd_A | 7e-14 | 119 | 192 | 11 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gnd_C | 7e-14 | 119 | 192 | 11 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gne_A | 7e-14 | 119 | 192 | 11 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gnf_A | 7e-14 | 119 | 192 | 11 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gng_A | 7e-14 | 119 | 192 | 11 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gng_D | 7e-14 | 119 | 192 | 11 | 81 | Histone-lysine N-methyltransferase NSD3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a central role in integrating RNA silencing and chromatin signals in 21 nt siRNA-dependent DNA methylation on cytosine pathway leading to transcriptional gene silencing of specific sequences. Involved in a chromatin-based RNA silencing pathway that encompasses both post-transcriptional gene silencing (PTGS) (e.g. RDR1, RDR6 and AGO2) and transcriptional gene silencing (TGS) (e.g. siRNA-dependent DNA methylation and histone H3) components. Mediates siRNA accumulation at specific chromatin loci. Binds H3K4me0 through its PHD to enforce low levels of H3K4 methylation and gene silencing at a subset of genomic loci. {ECO:0000269|PubMed:22940247}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011015561.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 44-like | ||||
Swissprot | Q9SIV5 | 0.0 | C3H19_ARATH; Zinc finger CCCH domain-containing protein 19 | ||||
TrEMBL | A0A2K2AFG8 | 0.0 | A0A2K2AFG8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s13760.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1435 | 15 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16485.1 | 0.0 | nucleic acid binding;zinc ion binding;DNA binding |