PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG014703.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 347aa    MW: 38814.6 Da    PI: 7.5345
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG014703.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.6e-09206253455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i++++  L++l+P +    +k    a +L + ++Y++sLq
  CCG014703.2 206 SHSLAERARREKIRKKMKSLQDLVPGC----NKITGRAGMLDEIINYVQSLQ 253
                  8**************************....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.04E-8200257No hitNo description
SuperFamilySSF474598.9E-16200271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16202266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.913202252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-7206253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-9208258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MFDALQQQQN NYVNQYNSLE SCSMPTDQFH GFVDHESMNG DIIDWKKKPE MYLGNNDLPK  60
YGGFSLNGTG LVANNRMDFG QAEVAGSVEI DRCLSRTSSC QIGVEEAAKT EEKVVAIKVA  120
GEDLTLMENK QSNNGSGDNS NKRKAEFVAA EECDNKIKVV EVDSKVKEKS SPEISADSSK  180
ENQKTSALPK TDYIHVRARR GQATDSHSLA ERARREKIRK KMKSLQDLVP GCNKITGRAG  240
MLDEIINYVQ SLQRQVEFLS MKLAALYPRP EFNIDNFSGK EVSKFNLSGM LTHKTFKIWG  300
SIKVNHLLFS SSTFTGVSRG LYQSQTSDVI LETNQHLKNS DSIVQQF
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00106PBMTransfer from AT2G18300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003719.10.0PREDICTED: transcription factor HBI1-like isoform X3
SwissprotQ9ZPW35e-53HBI1_ARATH; Transcription factor HBI1
TrEMBLA0A3N7G9341e-170A0A3N7G934_POPTR; Uncharacterized protein
STRINGPOPTR_0005s12370.11e-174(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1781856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.11e-40cryptochrome-interacting basic-helix-loop-helix 1