PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG014649.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 277aa    MW: 31405.6 Da    PI: 9.468
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG014649.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM42.52e-131153144
          NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykveP 44
                 lppGfrFhP+deel+v+yLk++v++++l++ ++i+e+d+yk  P
  CCG014649.1 11 LPPGFRFHPSDEELIVHYLKNRVTSSPLPA-SIIAEIDLYKKYP 53
                 79****************************.89*******9888 PP
2NAM74.62.5e-235011366128
          NAM  66 kkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  kky++g r++ra++sgyWkatg+dk+++++ +++++g+kktLvfy+gr pkg ktdW mheyrl
  CCG014649.1  50 KKYPNGARPHRAAASGYWKATGTDKSIFNSfGTAKIGVKKTLVFYEGRPPKGLKTDWNMHEYRL 113
                  79***************************989999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100529.4271141IPR003441NAC domain
SuperFamilySSF1019411.96E-458141IPR003441NAC domain
PfamPF023654.2E-2112113IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEAKASSGIQ LPPGFRFHPS DEELIVHYLK NRVTSSPLPA SIIAEIDLYK KYPNGARPHR  60
AAASGYWKAT GTDKSIFNSF GTAKIGVKKT LVFYEGRPPK GLKTDWNMHE YRLLDAMIWN  120
NPKGKGSMRL DDWVLCRVRQ KNSILRNTWQ DQNIPSCASA PTGLFPKVNE LRQMNINPNT  180
EMMLNPLKRK PAETNQQRGN CFPPGKMLRT KADIEEDVVS IRNDGTDENF SGTDQAEIGN  240
FSTEQWNSPM QYQEFNHLTF TGNHLTPDLN SVKSLYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-4421506173Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048576.10.0PREDICTED: putative NAC domain-containing protein 94
SwissprotQ8GY422e-55NAC25_ARATH; NAC transcription factor 25
SwissprotQ9LD443e-55NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A2K2A1F31e-176A0A2K2A1F3_POPTR; Uncharacterized protein
STRINGPOPTR_0016s08970.11e-127(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24162981
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.17e-58NAC domain containing protein 25
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]