PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG014614.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 307aa    MW: 33294.7 Da    PI: 8.657
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG014614.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.11.9e-16231267135
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  CCG014614.1 231 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANKGT 267
                  *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.64484119IPR010399Tify domain
SMARTSM009797.0E-1084119IPR010399Tify domain
PfamPF062001.5E-1087118IPR010399Tify domain
PROSITE profilePS5101713.205155197IPR010402CCT domain
PfamPF062036.6E-16155197IPR010402CCT domain
SMARTSM004014.1E-13225278IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.814225273IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.62E-12226277No hitNo description
Gene3DG3DSA:3.30.50.101.1E-15230272IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.08E-14230273No hitNo description
PROSITE patternPS003440231258IPR000679Zinc finger, GATA-type
PfamPF003202.1E-14231267IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MMDGISGSNN SVRMQTSTEA PNPSMQMHYD HHQNHQNGIQ MMNNANGMIM NNGDNDHDHN  60
GVVNGGGGDD DHGGTMMVAA DNLGKENGDQ LTLTFQGQVY VFDSVSPGKV QAVLLLLGGR  120
EVPAASTPTV PITTHHNSNN RGLSGTPQRF SVPQRLASLI RFREKRKERN FDKKIRYTVR  180
KEVALRMQRN KGQFTSSKPN HDDSASAATS WGSNESGGSD SNGSQHQEAV CRHCGISEKS  240
TPMMRRGPEG PRTLCNACGL MWANKGTLRD LSKAAPHTGP SSSSMNSNAM DGNTDGNQRV  300
AWKNDFS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011046529.10.0PREDICTED: GATA transcription factor 28
SwissprotQ8H1G01e-108GAT28_ARATH; GATA transcription factor 28
TrEMBLB9HV290.0B9HV29_POPTR; Uncharacterized protein
STRINGPOPTR_0010s25810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136512325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-99ZIM-like 1