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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
CCG014556.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
Family |
C3H |
Protein Properties |
Length: 479aa MW: 50708.7 Da PI: 8.5737 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
CCG014556.1 | genome | LZU | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 35.2 | 2.1e-11 | 51 | 74 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27
C++++rtG+C yG+rC+++H++
CCG014556.1 51 QDCMYYLRTGWCGYGARCRYNHPR 74
68********************96 PP
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2 | zf-CCCH | 41.3 | 2.5e-13 | 96 | 120 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
++lC++++rtGtCk+G++Ck++H++
CCG014556.1 96 QPLCQYYMRTGTCKFGASCKYHHPK 120
79*********************96 PP
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3 | zf-CCCH | 35.6 | 1.6e-11 | 140 | 166 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+++++C ++ +tG+Ck+G++CkF+H++
CCG014556.1 140 PGERECTYYIKTGQCKFGATCKFHHPQ 166
5789*********************97 PP
|
4 | zf-CCCH | 28.4 | 2.9e-09 | 302 | 328 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+++++C+++ +tG Ck+ ++C+++H+p
CCG014556.1 302 PGQPECQYYIKTGDCKFRSSCRYHHPP 328
5789*********************97 PP
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5 | zf-CCCH | 29.1 | 1.7e-09 | 351 | 374 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27
+ C+++ + G+Ck+G+ CkF H++
CCG014556.1 351 PTCSHYTQRGQCKFGPACKFDHPM 374
78********************95 PP
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Protein Features
? help Back to Top |
 |
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50103 | 14.493 | 47 | 75 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-4 | 47 | 74 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.7E-9 | 50 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.0E-5 | 53 | 74 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.089 | 93 | 121 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.5E-7 | 93 | 120 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 95 | 120 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.1E-11 | 96 | 120 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-5 | 98 | 119 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-4 | 139 | 166 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.934 | 139 | 167 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-8 | 141 | 166 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-6 | 142 | 167 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-4 | 145 | 165 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.483 | 301 | 329 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0031 | 301 | 328 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-4 | 303 | 328 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.03E-5 | 305 | 328 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.324 | 347 | 375 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.3E-6 | 347 | 374 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-7 | 351 | 374 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-5 | 351 | 377 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-4 | 353 | 372 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 479 aa
Download sequence Send
to blast |
MDRYGRAQEG SQSDPALEWT GSGPETGLEE GVWQLGLGET ESVYPERPNE QDCMYYLRTG 60 WCGYGARCRY NHPRDRSAVL GAPRAGGAEY PERVGQPLCQ YYMRTGTCKF GASCKYHHPK 120 QGGGSASPVS LNYYGYPLRP GERECTYYIK TGQCKFGATC KFHHPQPGNI QIPAQSLAPQ 180 IAPVPSPTLY PSVQSPSVPS SQQYGVMVAR PPLLPGSYVQ GPYGPVLLSP SVVPYPSWNP 240 YPAPVSPVAS PNTQPAVGSG SVYGLSALSP SAPAYTGAFQ SIPPATGPSS STQKEHLFPE 300 RPGQPECQYY IKTGDCKFRS SCRYHHPPEL VVSKTNVVLS PIGLPLRPGA PTCSHYTQRG 360 QCKFGPACKF DHPMGTLSYS PSASSLADMP VAPYLVGSSI GTLAPSSSSS DLRSKPISGP 420 SKDSSSTRLS SSTSIPSGSV GSIFSKSGPA PHLNVQQSGW SSGPSTNSSG SSSGTCTSI
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC182669 | 0.0 | AC182669.2 Populus trichocarpa clone Pop1-21I14, complete sequence. |