PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG014442.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 301aa    MW: 33877.8 Da    PI: 7.6437
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG014442.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12e-1097148155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+ +N  ++ Lr+++P++     ++ + a+i+  A+ ++k+L+
  CCG014442.1  97 QRMTHIAVERNRRKLMNGYLAVLRSHMPES---FVQRGDQASIVGGAIVFVKELE 148
                  79***************************9...9**************9999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.9E-1095151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-1395165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.32E-995152No hitNo description
PROSITE profilePS5088813.16796147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-897148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-8102153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MALEALSSTE FPNFVIDDTI PATPYNCHDS LETAGFLLED LKPQDHGVSV NTSSLMTQQR  60
CSVEATSRRQ NLLAVQGKKK RRRTPRVCKN REEAETQRMT HIAVERNRRK LMNGYLAVLR  120
SHMPESFVQR GDQASIVGGA IVFVKELEHL LQSLEAKKLK LHQGLTGPDY DIEDATATSE  180
VPPPPFAQFF VYPQYTWSQI PNKFTSKTKA SIADIEVNLI ETHANLRILS RRRPRQLSKL  240
VAGFQTLYLT VLHINVTTMD PLVLYSISAK LEEGCHLTSV DDIAGAVHHM LRIIEEETAL  300
C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17782KKKRRR
297108RMTHIAVERNRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018549.10.0PREDICTED: transcription factor bHLH71-like isoform X2
SwissprotQ56XR05e-75BH071_ARATH; Transcription factor bHLH71
TrEMBLU5GN120.0U5GN12_POPTR; Uncharacterized protein
STRINGPOPTR_0001s02350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.12e-77beta HLH protein 71
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]