PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG014410.2

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 376aa MW: 42790.3 Da PI: 10.2337

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG014410.2	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.8	8.8e-32	200	253	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk +lelm+vk+Ltl+hvkSHLQ+YR+ CCG014410.2 200 PRMRWTTTLHARFVHAVELLGGHERATPKLVLELMDVKDLTLAHVKSHLQMYRT 253 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.84E-15	197	254	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.8E-28	198	253	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-22	200	253	IPR006447	Myb domain, plants
Pfam	PF00249	3.6E-7	201	252	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MELFPAQPDL SLQISPPNSK PTSTWRRTEE EMDLAFWNRA LDSRNSMSSM ENSDTCFELS 60 LSNPRVSEPN SNHLHNILQN TNNCNGNSLF HSFQKNQYTH PHHKQNRLHN HHPVLFQPQQ 120 QEGLSQELGF LRPIRGIPVF QNPPPFPFSQ QTLDNTCSQD ASLATTNNTS ATTLSPYRSQ 180 GLMRSRFMSR FPAKRSMRAP RMRWTTTLHA RFVHAVELLG GHERATPKLV LELMDVKDLT 240 LAHVKSHLQM YRTVKTDRAA AAPSAQSDVF DNGSSGDTSE DFMLDIQNPR RLDISKQQGR 300 PGAHQDKDYH ALWSNSSSRE AWLHGKLKDS GGNLPFLEKT RLFILFLHHA MPVGKKQERQ 360 GAFTLLIAQV IRKLKG

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MELFPAQPDL SLQISPPNSK PTSTWRRTEE EMDLAFWNRA LDSRNSMSSM ENSDTCFELS  60
LSNPRVSEPN SNHLHNILQN TNNCNGNSLF HSFQKNQYTH PHHKQNRLHN HHPVLFQPQQ  120
QEGLSQELGF LRPIRGIPVF QNPPPFPFSQ QTLDNTCSQD ASLATTNNTS ATTLSPYRSQ  180
GLMRSRFMSR FPAKRSMRAP RMRWTTTLHA RFVHAVELLG GHERATPKLV LELMDVKDLT  240
LAHVKSHLQM YRTVKTDRAA AAPSAQSDVF DNGSSGDTSE DFMLDIQNPR RLDISKQQGR  300
PGAHQDKDYH ALWSNSSSRE AWLHGKLKDS GGNLPFLEKT RLFILFLHHA MPVGKKQERQ  360
GAFTLLIAQV IRKLKG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-16	201	255	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-16	201	255	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-16	201	255	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-16	201	255	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-16	201	255	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-16	201	255	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-16	201	255	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-16	201	255	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-16	201	255	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-16	201	255	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-16	201	255	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-16	201	255	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011018495.1	0.0	PREDICTED: probable transcription factor KAN2 isoform X2
Swissprot	Q9C616	8e-80	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	U5GMY7	0.0	U5GMY7_POPTR; Uncharacterized protein
STRING	POPTR_0001s02010.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5968	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	2e-59	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]