PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG014378.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family BBR-BPC
Protein Properties Length: 222aa    MW: 24304.2 Da    PI: 10.7115
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG014378.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind238.45.3e-7363222138301
    GAGA_bind 138 eeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCC 235
                   +++++a+++k+  k +++  pk+   k++kk s    +k++k +   ++k+ekk++d+ + ++++D s++P P CsCtG++r+CYkWG+GGWqS+CC
  CCG014378.1  63 GTKPTKARKQKSAAKDSNQIPPKVLGPKQPKKIS----SKKTKGQITLEAKHEKKNLDIDIGKINFDLSGVPSPFCSCTGMPRVCYKWGAGGWQSSCC 156
                  2333334444444444455556666666666633....333334445789************************************************ PP

    GAGA_bind 236 tttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                  t +iS +PLP+s++r+g R+agrKmS+ga+ klL kL+aeGy+ls+p+D+k+hWA+HGtnkfvti+
  CCG014378.1 157 TDSISEHPLPMSSTRPGVRMAGRKMSNGAYVKLLLKLSAEGYNLSHPLDMKKHWARHGTNKFVTIK 222
                  *****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.6E-1041222IPR010409GAGA-binding transcriptional activator
PfamPF062175.8E-6659222IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGTNSRNHLI PEAIFSWFYP GSFFSSLKTN SGLDRTQIDP QPGLPVAPIR SISPADLAKI  60
NSGTKPTKAR KQKSAAKDSN QIPPKVLGPK QPKKISSKKT KGQITLEAKH EKKNLDIDIG  120
KINFDLSGVP SPFCSCTGMP RVCYKWGAGG WQSSCCTDSI SEHPLPMSST RPGVRMAGRK  180
MSNGAYVKLL LKLSAEGYNL SHPLDMKKHW ARHGTNKFVT IK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9822640.0FJ982264.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC7) gene, complete cds.
GenBankFJ9822650.0FJ982265.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018447.11e-164PREDICTED: protein BASIC PENTACYSTEINE7-like
RefseqXP_011018448.11e-164PREDICTED: protein BASIC PENTACYSTEINE7-like
RefseqXP_011018449.11e-164PREDICTED: protein BASIC PENTACYSTEINE7-like
SwissprotO822862e-68BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLH1ZN481e-154H1ZN48_POPTR; GAGA-binding transcriptional activator
STRINGPOPTR_0001s01620.11e-155(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1643089
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.47e-66basic pentacysteine 7