PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG014372.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 282aa MW: 31654.5 Da PI: 9.1544

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG014372.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104	8.9e-33	26	80	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl CCG014372.1 26 KPRLRWTADLHDRFVDAVTKLGGPDKATPKAVLRLMGLKGLTLYHLKSHLQKYRL 80 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.91	23	83	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-31	23	81	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.2E-24	26	80	IPR006447	Myb domain, plants
SuperFamily	SSF46689	6.63E-16	26	81	IPR009057	Homeodomain-like
Pfam	PF00249	8.8E-9	28	79	IPR001005	SANT/Myb domain
Pfam	PF14379	1.7E-22	126	171	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MERTTFVGGG NYPYENGMVM MTRDPKPRLR WTADLHDRFV DAVTKLGGPD KATPKAVLRL 60 MGLKGLTLYH LKSHLQKYRL GHQARRQNIS EQSRESRGAS YVNFSHGSSA TSTSSPRMDK 120 EQGEIPVAEA LNSQIEVQKT LQEQLEVQQK LQMRIEAQGK YLQSILEKAE KSLSQNLNDD 180 GNGNLEATRA QLTGFNLAIS SLIENLNAED RKPHITDLQG VNIKTNGSAI HIDREGQTQE 240 TKDVKHHLHG DSVHFDLNTK GTYDFVAANG SELELKMLSY RR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-19	26	79	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-19	26	79	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-19	26	79	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-19	26	79	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-19	26	79	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-19	26	79	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-19	26	79	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-19	26	79	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-19	26	79	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-19	26	79	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-19	26	79	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-19	26	79	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011018441.1	0.0	PREDICTED: myb family transcription factor APL-like
Swissprot	C0SVS4	8e-87	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A2K2BWY3	0.0	A0A2K2BWY3_POPTR; Uncharacterized protein
STRING	POPTR_0001s01560.1	1e-176	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5101	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	4e-72	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]