PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG014363.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRF

Protein Properties

Length: 361aa MW: 40412.2 Da PI: 9.1065

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG014363.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	72.3	5.4e-23	79	123	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH++r+r+rsrk++e+ CCG014363.1 79 DSEPGRCRRTDGKKWRCSKDAHPDSKYCERHMNRSRNRSRKPVES 123 689***************************************986 PP
2	QLQ	53	1e-18	18	53	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT aQ+++L++Q+l++KyL a++ vPp+Ll++i+k CCG014363.1 18 SFTLAQWHELEHQALIFKYLKAGLSVPPYLLLPIRK 53 8*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	7.9E-11	17	53	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.654	18	53	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	4.3E-14	18	52	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.45	79	123	IPR014977	WRC domain
Pfam	PF08879	1.2E-19	81	122	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MSNSSVTVAA VGPRAQPSFT LAQWHELEHQ ALIFKYLKAG LSVPPYLLLP IRKSFQLLSP 60 GFLHPSNSSY CSYFGKKIDS EPGRCRRTDG KKWRCSKDAH PDSKYCERHM NRSRNRSRKP 120 VESQTTSQSM STVESEIVTG SSSSGSRVYT TMPLPTIGNS GPLGFGSNMS HWQMESMPYG 180 VNSKDYRSPH GLKLEADEKT FLPEALGNTR SFGMNSTVDS TWHLTSQVPA SPVPESRNDA 240 LLQNYPQLRT LQDFEPLPVD DAPSKQQEQQ YLFGREFSSS GSVRQENQSL QPLFDEWPKC 300 RDMDSYFTDQ RSNKSSSGVQ LSMAIPMAPN SAPRSYHSPN GECVSLWNVL STTSHPRRPK 360 T

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MSNSSVTVAA VGPRAQPSFT LAQWHELEHQ ALIFKYLKAG LSVPPYLLLP IRKSFQLLSP  60
GFLHPSNSSY CSYFGKKIDS EPGRCRRTDG KKWRCSKDAH PDSKYCERHM NRSRNRSRKP  120
VESQTTSQSM STVESEIVTG SSSSGSRVYT TMPLPTIGNS GPLGFGSNMS HWQMESMPYG  180
VNSKDYRSPH GLKLEADEKT FLPEALGNTR SFGMNSTVDS TWHLTSQVPA SPVPESRNDA  240
LLQNYPQLRT LQDFEPLPVD DAPSKQQEQQ YLFGREFSSS GSVRQENQSL QPLFDEWPKC  300
RDMDSYFTDQ RSNKSSSGVQ LSMAIPMAPN SAPRSYHSPN GECVSLWNVL STTSHPRRPK  360
T

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011018425.1	0.0	PREDICTED: growth-regulating factor 5-like
Refseq	XP_011018426.1	0.0	PREDICTED: growth-regulating factor 5-like
TrEMBL	U5GUE9	0.0	U5GUE9_POPTR; Uncharacterized protein
STRING	POPTR_0001s01480.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4781	29	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	1e-36	growth-regulating factor 2