PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG014239.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 244aa MW: 27751 Da PI: 9.1873

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG014239.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.2	2.6e-07	144	191	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L++++P + k + a L + ++Y++sLq CCG014239.1 144 SHSLAERVRRGKINERLRCLQDIVPGC----YKTMGMAVRLDEIINYVQSLQ 191 8************************98....244677777777777777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.50E-7	138	193	No hit	No description
SuperFamily	SSF47459	2.22E-13	138	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.2E-13	140	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.342	140	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-4	144	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0043	146	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MAAINQFTEV NQAIQLDYPI MNNFHSFTPF TSDNFFSHQS PEFPGNLAGI FLPGSFHQND 60 QNVMPVSQTF TTPAKESEFQ ESKRRAMDMS ESSCMNSSPQ VSESGSKKRR SSRRGKRVKS 120 NEEEEEKTRE VVHVRARRGQ ATDSHSLAER VRRGKINERL RCLQDIVPGC YKTMGMAVRL 180 DEIINYVQSL QNQFLSMKLT AASTFYDFTI ETVQRAKAQE TKELQRATRE GSGGHAQSHS 240 SWLL

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011007722.1	1e-162	PREDICTED: LOW QUALITY PROTEIN: transcription factor BEE 3-like
Swissprot	Q8GWK7	4e-61	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	A0A2K1XHY7	1e-160	A0A2K1XHY7_POPTR; Uncharacterized protein
STRING	POPTR_0012s05210.1	1e-126	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3360	34	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73830.1	1e-53	BR enhanced expression 3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]