PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG014190.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 602aa    MW: 67202.4 Da    PI: 6.2502
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG014190.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3711.5e-2265165198
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++ +++a+++       +++    ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + +++e
  CCG014190.1  65 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RGENGE 158
                  99****************************964333..4459************************************************..449999 PP

                  .EEEEE- CS
           B3  92 lvvkvfr 98 
                  l+v+v+r
  CCG014190.1 159 LRVGVRR 165
                  *****97 PP
2Auxin_resp110.61.6e-36191273183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha+st++ F+v+Y+Pr+s+seF+v+++k+ +a ++k+svGmRfkm+fe+e+++err+sGt+vgv d  ++ W +S+WrsLk
  CCG014190.1 191 ASHAISTGTLFSVFYKPRTSRSEFIVNLNKYIEAQNHKLSVGMRFKMRFEGEEVPERRFSGTIVGVGDNISSGWADSEWRSLK 273
                  789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.97E-4455194IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-4162180IPR015300DNA-binding pseudobarrel domain
CDDcd100178.65E-2163165No hitNo description
PfamPF023622.2E-2065165IPR003340B3 DNA binding domain
PROSITE profilePS5086311.27965167IPR003340B3 DNA binding domain
SMARTSM010191.0E-2165167IPR003340B3 DNA binding domain
PfamPF065078.7E-35191273IPR010525Auxin response factor
PfamPF023091.6E-6473512IPR033389AUX/IAA domain
PROSITE profilePS5174526.902476569IPR000270PB1 domain
SuperFamilySSF542777.85E-10479553No hitNo description
PfamPF023092.6E-6520566IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MEQQMPSFNL PSKILCKVVN VQRRAEPETD EVYAQITLLP EPDQSEVTSP DPPLPEPERC  60
TVHSFCKTLT ASDTSTHGGF SVLRRHADDC LPPLDMSQQP PWQELVATDL HGNEWHFRHI  120
FRGQPRRHLL TTGWSVFVSS KKLVAGDAFI FLRGENGELR VGVRRLMRQQ TNMPSSVISS  180
QSMHLGVLAT ASHAISTGTL FSVFYKPRTS RSEFIVNLNK YIEAQNHKLS VGMRFKMRFE  240
GEEVPERRFS GTIVGVGDNI SSGWADSEWR SLKVHWDEPS SILRPERVSP WDLEPLVATT  300
PSNSQPMQRN KRPRPSVLPS PTADLSALGM WKPSVESSAF SYGESQRGRD PYPSPNFSTT  360
AKANSLSFCG NSQVTSVSPN SMYRPNQVES VTDSFAPVVN KDLGERRQGT GIGYRLFGIQ  420
LIDNFNAEGT SPVVTVSGTV GNDRQVESLE AESDQHSEPE KSCLRCHQEL QSRQIRSCTK  480
VHMQGVAVGR AVDLTQFERY EDLLRKLEEM FDIEGELSGS TKKWQVVYTD NEDDMMKVGD  540
DPWHEFCSMV KKIFIYASEE VKRLSPKVKL SGDEEIKGGS ANANADAAVN TEDRSSVVGP  600
GC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.0129660355Auxin response factor 1
4ldw_A0.0129660355Auxin response factor 1
4ldw_B0.0129660355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310314KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM1130350.0KM113035.1 Populus davidiana x Populus alba var. pyramidalis auxin response factor 1 family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003708.10.0PREDICTED: auxin response factor 1-like
RefseqXP_011003709.10.0PREDICTED: auxin response factor 1-like
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A1L6K4710.0A0A1L6K471_POPTO; Auxin response factor
TrEMBLU5GHK90.0U5GHK9_POPTR; Auxin response factor
STRINGPOPTR_0003s00890.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68022638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]