PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB

Protein Properties

Length: 307aa MW: 34516.5 Da PI: 7.7474

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG014173.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.3	2e-09	28	73	3	46
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT+eE +++ +a +++ ++ +W ++a++++ g+t +++ ++ CCG014173.1 28 KWTPEENKQFENALALHDKDtpdRWLKVAAMIP-GKTVGDVIKQYRE 73 8******************************.****9999986 PP
2	Myb_DNA-binding	45	2.5e-14	135	179	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + +++G+g+W+ I+r ++Rt+ q+ s+ qky CCG014173.1 135 PWTEEEHRQFLLGLQKYGKGDWRNISRNYVTTRTPTQVASHAQKY 179 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.291	24	79	IPR017884	SANT domain
SMART	SM00717	3.8E-10	25	77	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.8E-4	27	74	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.65E-11	27	81	IPR009057	Homeodomain-like
CDD	cd00167	2.33E-8	28	74	No hit	No description
Pfam	PF00249	3.1E-8	28	73	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	19.67	128	184	IPR017930	Myb domain
SuperFamily	SSF46689	1.44E-17	129	184	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-18	131	183	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	2.9E-12	132	178	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-12	132	182	IPR001005	SANT/Myb domain
CDD	cd00167	5.20E-11	135	180	No hit	No description
Pfam	PF00249	4.7E-12	135	179	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MNRGIGILSP ASYLQNSNWF FHESGGTKWT PEENKQFENA LALHDKDTPD RWLKVAAMIP 60 GKTVGDVIKQ YRELEEDVSD IEAGLIPIPG YNSDCFTLEW VSNHGYEELE QFYSPGGKRG 120 TATRPSEQER KKGVPWTEEE HRQFLLGLQK YGKGDWRNIS RNYVTTRTPT QVASHAQKYF 180 IRQSTGGKDK RRSSIHDITT VNLPDARSPS PENRNPSSPG HSTSTKQSQA PPITTGMVKE 240 LFDWKPQNEG TATVFNPANG NLLMAPICGM SSYGPKLQEQ NLLGGTLPGY QFGPYNLIFQ 300 MQSMQHH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	3e-15	26	93	8	75	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00296	DAP	Transfer from AT2G38090	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011003665.1	0.0	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q8S9H7	1e-114	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A2I4KKD5	0.0	A0A2I4KKD5_POPTR; MYB family protein
STRING	POPTR_0016s11980.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF466	34	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	1e-126	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]