PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG013994.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 350aa MW: 40026.4 Da PI: 8.5353

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG013994.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.8	6.3e-51	11	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhP+deel+v+yLk++v++++l++ ++i+e+d+yk++Pw+Lp +++ + +ewyfF++rd+ky++g r+nra++sgyWkatg+dk++++ CCG013994.1 11 LPPGFRFHPSDEELIVHYLKNRVTSSPLPA-SIIAEIDLYKYNPWELPsLYIEKalfGVDEWYFFTPRDRKYPNGARPNRAAASGYWKATGTDKSIFN 107 79**************************.89***********433333344788********************************** PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++++g+kktLvfy+gr pkg ktdW mheyrl CCG013994.1 108 SfGTAKIGVKKTLVFYEGRPPKGLKTDWNMHEYRL 142 989999*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-60	8	170	IPR003441	NAC domain
PROSITE profile	PS51005	59.243	11	170	IPR003441	NAC domain
Pfam	PF02365	8.3E-27	12	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MEAKASSGIQ LPPGFRFHPS DEELIVHYLK NRVTSSPLPA SIIAEIDLYK YNPWELPSLY 60 IEKALFGVDE WYFFTPRDRK YPNGARPNRA AASGYWKATG TDKSIFNSFG TAKIGVKKTL 120 VFYEGRPPKG LKTDWNMHEY RLLDAMIWNN PKGKGSMRLD DWVLCRVRQK NSILRNTWQD 180 QNIPSCASAP TGLFPKVNEL RQMNINPNTE MVMNYFYDDC PMLPCIFSPQ NFPTTERASS 240 INFLSSAKSC TSFHKMLNPL KRKPAETNQQ RGNCFPPGKM LRTKADIEED VVSIRNDGTD 300 ENFSGTDQAE IGNFSTEQWN SPMQYQEFNH LTFTGNHLTP DLNSVKSLYL

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MEAKASSGIQ LPPGFRFHPS DEELIVHYLK NRVTSSPLPA SIIAEIDLYK YNPWELPSLY  60
IEKALFGVDE WYFFTPRDRK YPNGARPNRA AASGYWKATG TDKSIFNSFG TAKIGVKKTL  120
VFYEGRPPKG LKTDWNMHEY RLLDAMIWNN PKGKGSMRLD DWVLCRVRQK NSILRNTWQD  180
QNIPSCASAP TGLFPKVNEL RQMNINPNTE MVMNYFYDDC PMLPCIFSPQ NFPTTERASS  240
INFLSSAKSC TSFHKMLNPL KRKPAETNQQ RGNCFPPGKM LRTKADIEED VVSIRNDGTD  300
ENFSGTDQAE IGNFSTEQWN SPMQYQEFNH LTFTGNHLTP DLNSVKSLYL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-65	2	179	6	173	Stress-induced transcription factor NAC1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011048576.1	0.0	PREDICTED: putative NAC domain-containing protein 94
Swissprot	Q9LD44	3e-75	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A2K2A1F3	0.0	A0A2K2A1F3_POPTR; Uncharacterized protein
STRING	POPTR_0016s08970.1	1e-163	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2416	29	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	6e-78	NAC domain containing protein 25

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]