PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG013979.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ARF | ||||||||
Protein Properties | Length: 737aa MW: 81015.3 Da PI: 6.7266 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.6 | 1e-22 | 124 | 225 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f k+lt+sd+++ g +++p+ +ae + ++ + tl +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+vvF + +++ CCG013979.1 124 FAKTLTQSDANNGGGFSVPRYCAEMIfprldytADPPVQ--TLLAKDVHGETWKFRHIYRGTPRRHLLTTGWSPFVNHKKLIAGDSVVFF--RAENGD 217 89*********************999****997555555..8999*********************************************..348888 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+v+v+r+ CCG013979.1 218 LCVGVRRA 225 9****996 PP | |||||||
2 | Auxin_resp | 106.9 | 2.3e-35 | 293 | 376 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a++ a+++ +FevvY+Pra t+eF+vk++ v++a++++++ GmRfkmafetedss++++ +Gtv +v+++d++ Wp+S+Wr+L+ CCG013979.1 293 AVTLAANGLPFEVVYYPRANTPEFCVKASMVKTAMQIRWCSGMRFKMAFETEDSSRISWfMGTVCSVQAADSLWWPHSPWRLLQ 376 678899****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-36 | 114 | 233 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-29 | 117 | 235 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.76E-21 | 123 | 224 | No hit | No description |
Pfam | PF02362 | 3.8E-20 | 124 | 225 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.675 | 124 | 226 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-21 | 124 | 226 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.6E-31 | 293 | 376 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 11.958 | 619 | 695 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 737 aa Download sequence Send to blast |
MITFMEAKDK LKEEADKCLD SQLWHACAGG MVQMPAVNSK VFYFPQGHAE HACEPVDFRN 60 LPRVSHILCR VSDIKFMADP ETDEVFAKIR LVPINSIELD LDDQEVAVNG GMEAAQDNNK 120 PVSFAKTLTQ SDANNGGGFS VPRYCAEMIF PRLDYTADPP VQTLLAKDVH GETWKFRHIY 180 RGTPRRHLLT TGWSPFVNHK KLIAGDSVVF FRAENGDLCV GVRRAKRASG GGPESLWNPA 240 GGSSAVPSGG FGAFLREDEH KLMRSGSGNG NGSKSNESLM GQGKVRAEAV IQAVTLAANG 300 LPFEVVYYPR ANTPEFCVKA SMVKTAMQIR WCSGMRFKMA FETEDSSRIS WFMGTVCSVQ 360 AADSLWWPHS PWRLLQVTWD EPDLLQNVKR VSPWLVELAS NMAAIHFPAF SSPRKKLRLP 420 QHLDFPIDGQ FPMPIFSGNL LGPSSSFDCL PHNTPAGMQG ARHAHYGLPL SDPHLNKLQT 480 GLLRTGFPPL LDHTASLTKA SNVQTIPKPS MCEDVSCELT MAHSTQTSKK AVDAKIPQLV 540 LFGQPILAEQ QISLSCPGNA ASPVLTGNSS SEGNLDKMAN FSDGSVSTLH RRGLPECSSC 600 EELPWNKDKH QKSEPSLETG HCKVFLDSED VGRTLDLSLL GSYEELYRKL ADMFGLRNSE 660 KFSNVLYRDF NGITKHIGEE PFRVQMTFTL AFAAACASAS AGIENDLSRC SVNSCARLET 720 ATAMEPLCYS LELLMTV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-78 | 3 | 397 | 32 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT585479 | 0.0 | KT585479.1 Populus tomentosa auxin response factor 16 (ARF16) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011048545.1 | 0.0 | PREDICTED: auxin response factor 18-like | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A2K2A1C5 | 0.0 | A0A2K2A1C5_POPTR; Auxin response factor | ||||
STRING | POPTR_0006s12930.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF637 | 34 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
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