PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG013917.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 670aa    MW: 75213.2 Da    PI: 9.9236
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG013917.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32e-091346337
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                     +W t E++ll++av+++G+++W++Ia ++  +Rt 
      CCG013917.1 13 PWGTLEELLLACAVNRHGTDSWDSIAMEVS-NRTS 46
                     8*****************************.7774 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.72E-51066IPR009057Homeodomain-like
SMARTSM007175.5E-51066IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-41146IPR009057Homeodomain-like
CDDcd001672.19E-41364No hitNo description
PfamPF002491.6E-81346IPR001005SANT/Myb domain
Gene3DG3DSA:1.20.920.101.5E-14299426IPR001487Bromodomain
SMARTSM002974.4E-15315424IPR001487Bromodomain
SuperFamilySSF473701.26E-16320426IPR001487Bromodomain
CDDcd043695.18E-14327419No hitNo description
PfamPF004392.6E-10329404IPR001487Bromodomain
PROSITE profilePS5001411.298334405IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MAKQQPLQQP STPWGTLEEL LLACAVNRHG TDSWDSIAME VSNRTSTLSS LTSQNCIDKF  60
DDLKRRFGFP TELQNDTASL LVDELRKLRV DELRREVHQR DVSIVSLEMK VKRLEEDREK  120
SLKEKEKPPD LPKASSETVA GKSATGEECG DGDERSFNES NSTSQQPQKA EAEAEKERNE  180
DTEVKPEPDA IKDDPDPAWL GSDPEAEREW SYNGKLEDDD DKKPKKEMKI ESVSRVGVLG  240
PDSNELGESV GESKREEKEK DIKQVNNSNN NNNSDVQSSV SLSLKKKKRR RGSGEGSSSG  300
EEEREGGDDE VSPATKKLPA VKSEPWLKLL EIIRSHQLGS IFEKRLRSQE SERYKKLIRQ  360
HMDLQMIQSR LDKGVYSKCF KKLFKDLLIL LNNAIVFFRK NSPENLAAHE LRAVVLKEMK  420
EKLQKPKPKP VAVKPATEQY SASFSKPNKS TFTMVACSKH SSIKAISEGA GKKDDKKDAE  480
IEEKPKANEK KLEVSIVRIE EKGLKKKTTK ERSVSGRRNS RASSKNGEIK HQYGGNELSS  540
HDALEITVDR KESTGRKKLG AASFLKRMKQ NSPGQVTEND AEDSSSEDES KDSKTVDKKR  600
RRREADRITK RVTRSSKGRG LGEDSRNIKR GRPPKKQMDS GGGTGKRGRE DDDSEVGVGG  660
AGRAKKRSRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283289LKKKKRR
2284289KKKKRR
3284290KKKKRRR
4285290KKKRRR
5597602KKRRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015300.10.0PREDICTED: uncharacterized protein LOC105118942
RefseqXP_011025230.10.0PREDICTED: uncharacterized protein LOC105126156
TrEMBLA0A2K2BAG10.0A0A2K2BAG1_POPTR; Uncharacterized protein
STRINGcassava4.1_002976m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.11e-24DNA-binding bromodomain-containing protein