PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

CCG013905.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB_related

Protein Properties

Length: 271aa MW: 29782.5 Da PI: 8.6087

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG013905.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.4	6.7e-13	5	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE+e l +v+++G+g Wk I r R+ ++k++w++ CCG013905.1 5 KQKWTSEEEEALRAGVAKHGTGKWKNIQRDPEfnpylYSRSNIDLKDKWRNM 56 79************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.812	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.51E-16	2	59	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-8	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-14	5	56	IPR009057	Homeodomain-like
Pfam	PF00249	5.2E-9	5	56	IPR001005	SANT/Myb domain
CDD	cd11660	8.83E-21	6	57	No hit	No description
SuperFamily	SSF46785	3.81E-16	112	195	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.3E-15	112	185	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00526	3.1E-19	113	178	IPR005818	Linker histone H1/H5, domain H15
PROSITE profile	PS51504	23.842	115	183	IPR005818	Linker histone H1/H5, domain H15
Pfam	PF00538	6.1E-11	117	176	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MGNPKQKWTS EEEEALRAGV AKHGTGKWKN IQRDPEFNPY LYSRSNIDLK DKWRNMTVSA 60 GSQSVKDKSR TTKVKSIPDA AAAATPLPNP QTSAAAAAAD VVIDDYLEAA ADSKTAPKYN 120 AMIFEAISAF NEPNGADTSA IISYIEQRQE LPQNFRRQLS SRLRRLVAQE KLEKVQNCYK 180 IKKVSSFGTK TPTPKKEVRP KSVHDTGDTV EGAANDAAYS VAEAENKSFV ATEAVKESER 240 VSKMAEDADS LLQLANEILE KCLRGEIVIM G

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011003347.1	0.0	PREDICTED: telomere repeat-binding factor 4-like
Swissprot	F4IEY4	7e-72	TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBL	B9HDX4	0.0	B9HDX4_POPTR; Uncharacterized protein
STRING	POPTR_0006s14940.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3228	29	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17520.1	2e-69	MYB_related family protein

Publications ? help Back to Top
Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]