PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG013831.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 554aa    MW: 60958.9 Da    PI: 8.6661
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG013831.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.67.5e-15258301548
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                  +r++r++kNRe+A rsR+RK+a++ eLe+kv  Le+eN++L+k+
  CCG013831.1 258 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQ 301
                  79***************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.5E-16254318IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.8E-16254312No hitNo description
PROSITE profilePS5021711.76256301IPR004827Basic-leucine zipper domain
PfamPF001707.4E-13258303IPR004827Basic-leucine zipper domain
CDDcd147072.33E-25258308No hitNo description
SuperFamilySSF579591.0E-11258313No hitNo description
PROSITE patternPS000360261276IPR004827Basic-leucine zipper domain
PfamPF002959.1E-55326542IPR000743Glycoside hydrolase, family 28
Gene3DG3DSA:2.160.20.104.0E-64326540IPR012334Pectin lyase fold
SuperFamilySSF511262.43E-66328554IPR011050Pectin lyase fold/virulence factor
SMARTSM007103.4351377IPR006626Parallel beta-helix repeat
SMARTSM00710520431452IPR006626Parallel beta-helix repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004650Molecular Functionpolygalacturonase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MGMQTMGSQG DGSRHHKQSQ FQPLSRQNTM YSLTLDEVQN QLGDLGKPLS SMNLDELLKN  60
VWTVEANQTV EANRTTGLEV EGTPFTNQTA LQRQASISLT SPLSKKTVDE VWKDIQQSKH  120
DGEMKSRERQ PTLGEMTLED FLVKAGVVAE ASVDKKDGGS VVAVDTHAAQ QFLQQSQWVQ  180
YPPHPQYHHP QQSMMGVYMP GRPMPQPLHM GAGSMVDVSY PENQVTLPPP LMGTLSDTQT  240
PARKRGVPED MIGKTVERRQ KRMIKNRESA ARSRARKQAY TNELENKVSR LEEENERLRK  300
QRAQRHAKYD RLIMFFLVCR LKYSVNVCFN IVITGLTSLN SQMFHIVVNA CQNVTVKGVK  360
VSAAGNSSNT DGIHVSSSTS VTILNSRIGT GDDRISIGPG TSNLWIENVA CGPGQGISIG  420
ILGQDVQEAA VQNVTVKTTT FTGTENGVRI PSWGRPSNGF ARNILFQHAV MNNVQKPIII  480
DRNYCPGNKN CHGQDIPGSS AKEISVKFDC SKKYPCTGIN LEDIYLTSQN QPPEASCTNA  540
GAVASGLFQP TSCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bhe_A9e-15325484156314POLYGALACTURONASE
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1452790.0EF145279.1 Populus trichocarpa clone WS01122_M06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011032989.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLB9HK820.0B9HK82_POPTR; Uncharacterized protein
STRINGPOPTR_0008s01130.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.13e-75ABA-responsive element binding protein 3