PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG013724.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 571aa    MW: 65994 Da    PI: 6.4773
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG013724.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.74.1e-30122207187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW++qe+l+L+e+r+++++r++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  CCG013724.1 122 RWPRQETLTLLEIRSRLDSRFKEANQKGPLWDEVSRIMaEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 207
                  8*************************************999*****************************98..55667*******85 PP
2trihelix73.73.2e-23429513286
     trihelix   2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  Wt+ e+l  i++r++m++r+++ g ++++lWee+++ m++ g+ rs  +Ckekwe++n ++  ++e++kkr +e+ +t  yf+qle
  CCG013724.1 429 WTEPEILSFIQLRTSMDSRFQEnGYSNEGLWEEIAAEMASLGYDRSVDECKEKWESMNIYFNMTTESNKKR-KEDLRTSNYFQQLE 513
                  *********************84679********************************************8.788889******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.004115180IPR017877Myb-like domain
SMARTSM007170.4119182IPR001005SANT/Myb domain
CDDcd122031.23E-20121187No hitNo description
PfamPF138375.6E-21121208No hitNo description
PROSITE profilePS500907.352421486IPR017877Myb-like domain
SMARTSM007170.0074425488IPR001005SANT/Myb domain
CDDcd122038.17E-24427493No hitNo description
PfamPF138371.5E-17428514No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MSEHHHQYGM PDLRQLVAGR SHFQGTQQGG EPFFVQSRNL AAPQTHHFES IMVGHEAMLS  60
SGLVKLGGHH DRYCTNATNI NTTNSATIGT SSSAGVGTLY GVEMESATTA GWIGNDGGNN  120
SRWPRQETLT LLEIRSRLDS RFKEANQKGP LWDEVSRIMA EEHGYQRSGK KCREKFENLY  180
KYYKKTKEGK AGRQDGKHYR FFRQLEALYG EPSNQASASE THFVNNTLLY QAPMSNTINQ  240
ESQETFQENK HSESLSFSNT SEFETSSSEN NDDDLSAIAY NMMNRSTEKQ KGINESQSLA  300
RPKKSWKLKV KDFVDSQMRK LMEKQDAWME KMLKTIEDRE HERMCREEEW TKQELSRFDQ  360
EHEFWAKERA WIEARDAALM EALKKHTEKG LELSSSVEQI AVATQRHNKN PDSAGAKKIQ  420
KDKFNDITWT EPEILSFIQL RTSMDSRFQE NGYSNEGLWE EIAAEMASLG YDRSVDECKE  480
KWESMNIYFN MTTESNKKRK EDLRTSNYFQ QLESYNGMNS SPSNSYVGSQ VNDNSCFQVQ  540
INEGDQHLWN TNKFDLKLNK EKNQQQLWHN K
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1840630.0AC184063.2 Populus trichocarpa clone Pop1-108K13, complete sequence.
GenBankAC2144190.0AC214419.1 Populus trichocarpa clone POP109-H02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011032809.10.0PREDICTED: trihelix transcription factor PTL-like
TrEMBLB9HL340.0B9HL34_POPTR; Uncharacterized protein
STRINGPOPTR_0008s02580.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-116Trihelix family protein