PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG013679.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 419aa    MW: 46981.8 Da    PI: 4.2185
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG013679.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.43.8e-2591412128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykv.ePwdLpk...kvkaeekewyfFskrdkkyat.gkrknratk..sgyWkatgkdk 90 
                  ppG++F Ptdeel+ +yL +kv+g     e+++ ik+ +iy   ePw++ +    +k++++ +yfF++ +kk+ +  ++knr++    g+W+  g  +
  CCG013679.1   9 PPGYKFLPTDEELIGFYLDRKVNGGGlpDEAASLIKDYNIYGEeEPWEIFNrfeGHKSGDNGLYFFTTLSKKTVNcTRNKNRKVGknGGTWHGDGG-E 105
                  9***********************9953444456******97549****64244556688899******99999834456675333489****999.5 PP

          NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                  ev +++g+++g+k+ + + ++r+p+  +  W+m +y+ 
  CCG013679.1 106 EVSTREGAVIGMKNRFRYKNKRQPN--HDGWIMLQYSS 141
                  666669************9888888..99*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-275141IPR003441NAC domain
PROSITE profilePS5100527.5188156IPR003441NAC domain
PfamPF023655.4E-189140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MQNGPPRFPP GYKFLPTDEE LIGFYLDRKV NGGGLPDEAA SLIKDYNIYG EEEPWEIFNR  60
FEGHKSGDNG LYFFTTLSKK TVNCTRNKNR KVGKNGGTWH GDGGEEVSTR EGAVIGMKNR  120
FRYKNKRQPN HDGWIMLQYS SELISENIVI SQLKTKESKK RKTMDLSEIV GVAEDDDIIQ  180
ISQRFKYLPV INSEPTGSQD QQPHQIIQNQ ETWLEAAPAP VQNMEPELSA TVNRGAKPSQ  240
DQELLQSAEN VDTWLKAGVD SWEDDAGCAT EDSFTNIDPA LQVEPGQVNF TGEPTITENL  300
ETEIEAGIAR KEDGVVEAED IFHDLTDIVS NELAFQVGPD QQLDFIQETT ISENQQVALA  360
SFNNDHVKET ISDKLHDIEM ADYLEAIFNG YHISQIIQDL DHFMPSLDHN PAEESGDGA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152161LKTKESKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003330.10.0PREDICTED: NAC domain-containing protein 4-like
TrEMBLB9IDF80.0B9IDF8_POPTR; Uncharacterized protein
STRINGPOPTR_0015s00520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14731213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.11e-17vascular related NAC-domain protein 7