PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG013297.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 319aa    MW: 35748.6 Da    PI: 6.7431
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG013297.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.81.9e-22130190259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  dDg++WrKYGqK++ ++++pr+Y+rCt++   +C++ k+v+r +e+p +  +tY g+H+++
  CCG013297.1 130 DDGHAWRKYGQKVILNTKYPRNYFRCTHKydqHCQAIKQVQRIQEEPPLYRTTYYGHHTCK 190
                  8***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-24114190IPR003657WRKY domain
PROSITE profilePS5081119.634124187IPR003657WRKY domain
SuperFamilySSF1182901.96E-23125190IPR003657WRKY domain
SMARTSM007743.0E-33129191IPR003657WRKY domain
PfamPF031061.7E-22130190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDSSWHGNLP AKRKKAIDEL VRGQEIAAQL KLVMNKSVGV DESLFAEDLV KKIMNSFNSS  60
LYLLNGGEFD EVASQIPQVG SPCWDGRKSS KDSGESGKGT AGLKVKDRRG CYKRRKSSHS  120
RTDDSTTLTD DGHAWRKYGQ KVILNTKYPR NYFRCTHKYD QHCQAIKQVQ RIQEEPPLYR  180
TTYYGHHTCK NLLKASQYVL DPSDHHDIDS SILISFNSNG DHPSSKPSNS LPTSFQTVKQ  240
ECCHKDDNMN IPSYDPTTHY SNQASSDYLL SPDNYMSAFD HGDVISGVNS SCTTSSHSLD  300
MDGIMMESAD FDDDGVFGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-22130190969OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011001689.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A2K1XFB70.0A0A2K1XFB7_POPTR; WRKY family protein
STRINGPOPTR_0016s14490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.16e-33WRKY DNA-binding protein 70