PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG013253.3
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 565aa    MW: 62222.8 Da    PI: 6.5106
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG013253.3genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88e-13342420455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC..............................TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkas...........................kapskKlsKaeiLekAveYIksLq 55 
                   hn  ErrRRdriN+++  L+el+P+++                                  +Ka++L +A+eY+ksLq
  CCG013253.3 342 VHNLSERRRRDRINEKMRALQELIPHCYkeysielillqafilllpkcpslyevkLVLMLQTDKASMLDEAIEYLKSLQ 420
                  6*************************999********************99999733444479***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.533338419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.80E-13341424No hitNo description
Gene3DG3DSA:4.10.280.103.1E-17342368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-15342370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-10342420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-12344425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-17400428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-15401435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MNHYIPDWNF EGDLPVSNQK KPIELGNDLV ELLWRNGQVV LHSQAHRKPS PHVQKHDSPT  60
VKGSGSILNS SHLIQDDDAV SWIQYPLEDS FEKEFCSNFF SELPPPLSDQ ILEEKSAKFD  120
ASAPSQQQHQ HQHQRQLNNN KPHVVSEFSG NPMPPPRIQV PEKNHAGVGG FGEAVNANFS  180
QFSAPFKGGD FRTSNGQFGG QGSGNSPQGE VRECSVVTVG SSNQIPHDRD MSRASSNAVG  240
TSTAFSTGPS MDDPRKIVSE SERGKTETLE ATLTSSSGGS GSSFGRTCKQ SAGPSGSQKR  300
KTIDTEDSEY QSEAAELDLD SMAGNNPTKR SGSTRRNRAA EVHNLSERRR RDRINEKMRA  360
LQELIPHCYK EYSIELILLQ AFILLLPKCP SLYEVKLVLM LQTDKASMLD EAIEYLKSLQ  420
LQLQVMWMCG GMAPMLFPGV QHFMSRMGMG PPLSSMQNPM HLPRVQLIDQ SISMAPTQNQ  480
GVMCQTPELN PVNFHNQMQN PAFADQYARF MGFHMQAASQ PMNMFRFGSQ TVQQNQMMAP  540
TSSVGGPLSA GTAVGEAPPS DDKMG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1346351ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011032742.10.0PREDICTED: transcription factor PIF4-like isoform X2
TrEMBLB9GSQ90.0B9GSQ9_POPTR; Uncharacterized protein
STRINGPOPTR_0005s22870.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.21e-43phytochrome interacting factor 4