PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG013250.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 908aa    MW: 100339 Da    PI: 6.6376
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG013250.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.41.4e-23133234199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae+        + +++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +
  CCG013250.1 133 FCKTLTASDTSTHGGFSVPRRAAEKVfpaldysQTPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQ 226
                  99****************************97544444..48************************************************..889999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++++r+
  CCG013250.1 227 LLLGIRRA 234
                  9****997 PP
2Auxin_resp118.55.5e-39259342183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+t+s F+++YnPras+seFv+++ k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  CCG013250.1 259 AAHAAATNSRFTIFYNPRASPSEFVIPLFKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 342
                  79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.54E-48118262IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-41125248IPR015300DNA-binding pseudobarrel domain
CDDcd100172.94E-21132233No hitNo description
SMARTSM010191.3E-23133235IPR003340B3 DNA binding domain
PROSITE profilePS5086312.52133235IPR003340B3 DNA binding domain
PfamPF023628.4E-22133234IPR003340B3 DNA binding domain
PfamPF065076.0E-34259342IPR010525Auxin response factor
SuperFamilySSF542775.69E-6766849No hitNo description
PfamPF023094.0E-7767857IPR033389AUX/IAA domain
PROSITE profilePS5174521.963775859IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 908 aa     Download sequence    Send to blast
MRLSSSSSSF TGFNQQTPEG DKKCLNSELW HACAGPLVSL PLVGSRVVYF PQGHSEQVAA  60
STNKEVDAHI PNYPSLPPQL ICQLHNVTMH ADVETDEVYA QMTLQPLSQD DQKDAYLLPA  120
ELGTASKQPT NYFCKTLTAS DTSTHGGFSV PRRAAEKVFP ALDYSQTPPA QELIARDLHD  180
NEWKFRHIFR GQPKRHLLTT GWSVFVSAKR LVAGDSVLFI WNEKNQLLLG IRRANRPQTF  240
MPSSVLSSDS MHIGLLAAAA HAAATNSRFT IFYNPRASPS EFVIPLFKYI KAVYHTRVSV  300
GMRFRMLFET EESSVRRYMG TITGISDLDP VRWPNSHWRS VKVGWDESTA GERQPRVSLW  360
EIEPLTTFPM YPSAFPMRLK RPWPSGLPSF HGLKDGDLNI NSPMMWLQGG VGDLGVQSLN  420
FQSFGVAPWI QPRFDTSMPA LQPEMYQTMA AAALQEMRTV ESSKLASQSH LQFQQSQNVS  480
NGPTALTQRQ MLQQSNLQHA LLQNFQENQA STQAQFLQQH LLHRNQYTGQ QLQQHQPQLQ  540
QVQQPKQLNE LSAPQQIPNV ISALPHLTSV ALTQSPSLQP ISSRCQQQAF SEPLGNSIAA  600
SDVSSMHSVI GSLSQDGGSH LLNSNGSNPV ISPALLSKRA AIDPQLSSGA AHCALPQVEQ  660
LRTTQSTVSD LATLLAPFSG REYSTYQGAN DPQNNLLFGV NIDSSTFMLQ HGIPNLRNIG  720
TENDPLSMPF AASTFTSATG SDIPLNSDMT ASSCVDESGF LQSSENVDQV NPSTRTFVKV  780
HKSGSYGRSL DISKFSSYDE LRSELARLFC LEGLLEDPQR SGWQLVFGDR ENDVLLLGDD  840
PWQEFVNNVW YIKILSPLEV QQMGKEGLSP AASVPSQKLS NSNCDGHMNR QGFRNSSNGI  900
ASMGSLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1612236348388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1471320.0EF147132.1 Populus trichocarpa clone WS01228_B04 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011032738.10.0PREDICTED: auxin response factor 6-like isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLB9H8680.0B9H868_POPTR; Auxin response factor
STRINGPOPTR_0002s05590.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]