PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG013244.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 683aa    MW: 76758 Da    PI: 5.6256
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG013244.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.26.9e-14463509455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  CCG013244.1 463 NHVLAERRRREKLNERFIMLRSLVPFV-----TKMDKASILGDTIEYVKQLR 509
                  7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.9E-529186IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.561459508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-19461527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-20463527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.33E-15463513No hitNo description
PfamPF000101.9E-11463508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-18465514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MATPPSSRLQ TMLQAAVQSI QWTYSLFWQM CPQQGILVWG DGYYNGPIKT RKTVQPMEVT  60
TEEASLQRSQ QLRELYDSLS IGETNQPARR PCAALSPEDL TETEWFYLMC VSFSFPPGVG  120
LPGKAYARRK HAWLPGANEI DSKTFSRAIL AKTVVCIPLL DGVVEFGTTD KVQEDIGLIQ  180
HVKTFFSDHR HLTPPKPALS EHSTSNPATS SHDHPRFHPP PIPPFYVAAE PSANAEQIDE  240
DDEEDDEEEE HDSDSEAETS RDDPRQAQSP HQVAAAEPSE LMQLEMSEDI RLGSPDDGSN  300
NLDSDFPLTG PDNLMDHRSR ADSYKAESAR RWTMLQDNPF SGNLQPSASG PPPLEDLAQE  360
DTHYSQTISA ILQSQPVWLS AEPSSIAYEA RYHQSAFSRW TNRSEHLFHV SVETPSQWLL  420
KYILFSVPHL HSKNREDNSP KSRDGEAASR FRKGTPQDEL SANHVLAERR RREKLNERFI  480
MLRSLVPFVT KMDKASILGD TIEYVKQLRQ KIQDLETRNK QMESEQRSRS VDRPQRTSTS  540
DSLKKQRSGV TVVDRARSLG PVPDKRKMRV VEDSAGGGAK PKSVGALPQP EPVVHKEPET  600
SVEVSIIESD ALLELECGFR EGLLLDIMQM LRELRIETIA VQSSLNNGIF AGELRAKVKE  660
NVNGKKVSIV EVKRAIHKII PHD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-2191879193Transcription factor MYC3
4rqw_B5e-2191879193Transcription factor MYC3
4rs9_A5e-2191879193Transcription factor MYC3
4yz6_A5e-2191879193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1467472ERRRRE
2468473RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ9097570.0KJ909757.1 Populus tremula x Populus tremuloides clone INRA 353-38 basic helix-loop-helix transcription factor (bHLH131) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011032731.10.0PREDICTED: basic helix-loop-helix protein A isoform X2
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A2K2AJW00.0A0A2K2AJW0_POPTR; Uncharacterized protein
STRINGPOPTR_0002s05510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-99bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]