PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG013103.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 337aa MW: 37880.3 Da PI: 5.0317 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 71.1 | 2.8e-22 | 12 | 133 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya..tgkrknratksgyWkatgkdkevlsk..k 96 +G rF+P+deel +yL +k+ g+++ + + i+ +d y+++P+dLp ++++ e +fFs+ + k + ++ r nr+t +g W atgk+ e++s+ + CCG013103.1 12 VGDRFNPNDEELTYHYLMQKLLGNDHLV-SRIPLLDPYQFDPSDLP---YSDDGEGHFFSPLHPKFPgtNDGRINRSTGTGSWLATGKHCEITSQhnG 105 689**********************877.77***************...4577899*****99998865788**********************9656 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 + + g++k+ v + ++ + + vmhey++ CCG013103.1 106 EVNSGIRKIYVHSRVKD----EIKYVMHEYSI 133 66699***999874443....569******86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-27 | 7 | 148 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.077 | 10 | 148 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-12 | 12 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MTRMTTPFEY NVGDRFNPND EELTYHYLMQ KLLGNDHLVS RIPLLDPYQF DPSDLPYSDD 60 GEGHFFSPLH PKFPGTNDGR INRSTGTGSW LATGKHCEIT SQHNGEVNSG IRKIYVHSRV 120 KDEIKYVMHE YSIPNLSTSL VLCKVMKKMP SKKVKKRKEA AELPLPICNE DNSTPASSVM 180 KKKTSVKKSK GPGKKVKRTD EKADMPCNKE NITPVPDEGS DLENWITSDK SDFSTYNNII 240 DNKDQQTGKS TCDNGGTPAS TCPVSDFTIP EDQVDPEILP HLQSFLGYDQ LDYSRYDFTQ 300 VDPPLITEQV STNNGPAGTS MFDPEEDPFD VLETLWA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-16 | 13 | 153 | 23 | 173 | NAC domain-containing protein 19 |
3swm_B | 1e-16 | 13 | 153 | 23 | 173 | NAC domain-containing protein 19 |
3swm_C | 1e-16 | 13 | 153 | 23 | 173 | NAC domain-containing protein 19 |
3swm_D | 1e-16 | 13 | 153 | 23 | 173 | NAC domain-containing protein 19 |
3swp_A | 1e-16 | 13 | 153 | 23 | 173 | NAC domain-containing protein 19 |
3swp_B | 1e-16 | 13 | 153 | 23 | 173 | NAC domain-containing protein 19 |
3swp_C | 1e-16 | 13 | 153 | 23 | 173 | NAC domain-containing protein 19 |
3swp_D | 1e-16 | 13 | 153 | 23 | 173 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 151 | 157 | KKVKKRK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU285968 | 2e-50 | GU285968.1 Populus balsamifera isolate GAL12 haplotype A unknown protein gene, partial sequence. | |||
GenBank | GU285969 | 2e-50 | GU285969.1 Populus balsamifera isolate GAL12 haplotype B unknown protein gene, partial sequence. | |||
GenBank | GU285972 | 2e-50 | GU285972.1 Populus balsamifera isolate HAY07 haplotype A unknown protein gene, partial sequence. | |||
GenBank | GU285974 | 2e-50 | GU285974.1 Populus balsamifera isolate STO11 haplotype A unknown protein gene, partial sequence. | |||
GenBank | GU285976 | 2e-50 | GU285976.1 Populus balsamifera isolate WHR03 haplotype A unknown protein gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011002894.1 | 0.0 | PREDICTED: NAC domain-containing protein 4-like isoform X2 | ||||
TrEMBL | A0A2K1WS74 | 0.0 | A0A2K1WS74_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s13140.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF39394 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46590.1 | 4e-19 | NAC domain containing protein 96 |