PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG013050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 298aa MW: 33304.2 Da PI: 7.8855 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.3e-05 | 54 | 76 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H CCG013050.1 54 YSCSFCNREFRSAQALGGHMNVH 76 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.84E-6 | 51 | 81 | No hit | No description |
PROSITE profile | PS50157 | 11.552 | 54 | 81 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0028 | 54 | 76 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.6E-6 | 54 | 77 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 56 | 76 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MEQAQYWLWM KRKQLLKSQL PAPMKSISGS WEEKAFAEDS SGHLGGCIWP PRSYSCSFCN 60 REFRSAQALG GHMNVHRRDR ARLKQSLSPH NYVFQHQNHI QNSLKPLGSH FPSDQVCTLD 120 NYDLDPKLSV SRTTNIESTL SSYRVSTLSS QEHLSEHAFV SPPSSSFVQE QHKGYPYLHD 180 NLSGSDHSLS VRLHSKPEAE RNQGEVKVTC LNHDKFAATD LFMDLGSVIN SHSLLSPGSC 240 GDEAVSCKRP RTNVSVLSLL VKPRPNDGYI LQSEATGPTS SSNEGIDLEL RLGETPKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-12 | 49 | 76 | 2 | 29 | superman protein |
2l1o_A | 2e-12 | 49 | 76 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002316269.1 | 0.0 | zinc finger protein 10 | ||||
TrEMBL | B9HT74 | 0.0 | B9HT74_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s20740.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1776 | 30 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06070.1 | 2e-26 | C2H2 family protein |