PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG012997.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 298aa MW: 33685.1 Da PI: 8.9436 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.8 | 6.5e-34 | 59 | 199 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....tk..sgy 82 lp+G++F+Ptd+el+ e+L+ kv+++ ++ e+i+++d i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+ t+ + + CCG012997.1 59 LPAGVKFDPTDQELL-EHLEGKVKSDIrkvhplID--EFIPTIDgengICYTHPEKLP-GVSKDGLIRHFFHRPSKAYTTGTRKRRKvhtdTEggETR 152 799************.99*****998855543322..23444444445**********.555555677******************745553344667 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 W++tgk+++vl+ +g+++g kk+Lv+y g+++k+ekt+Wvmh+y+l CCG012997.1 153 WHKTGKTRPVLV-GGKVKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 199 ************.9*************6657999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.49E-39 | 53 | 218 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.892 | 59 | 218 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.5E-16 | 60 | 199 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MTWCNDCNDV QTIERSSPPP CNASVIVQRH KECLIRSCPS CGHQIKCQDQ ARIPDLPGLP 60 AGVKFDPTDQ ELLEHLEGKV KSDIRKVHPL IDEFIPTIDG ENGICYTHPE KLPGVSKDGL 120 IRHFFHRPSK AYTTGTRKRR KVHTDTEGGE TRWHKTGKTR PVLVGGKVKG YKKILVLYTN 180 YGKQRKPEKT NWVMHQYHLG NNEEEKDGEL VVSKVFYQTQ PRQCGSLIKD SVYVPSKLKV 240 QCSGHEGSNL KNSTTLEYYH PSSFISFDQS GQNRSTNPNP PQQLLSHFAV HDGSSFIP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00459 | DAP | Transfer from AT4G28500 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB970793 | 0.0 | AB970793.1 Populus nigra PniNAC122 mRNA for NAC transcriptional factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011043628.1 | 0.0 | PREDICTED: NAC domain-containing protein 8-like | ||||
Swissprot | O49459 | 1e-130 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | B9MYC7 | 0.0 | B9MYC7_POPTR; NAC family protein | ||||
STRING | POPTR_0017s04800.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1228 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-118 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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