PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG012997.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 298aa    MW: 33685.1 Da    PI: 8.9436
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG012997.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.86.5e-34591991128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....tk..sgy 82 
                  lp+G++F+Ptd+el+ e+L+ kv+++       ++  e+i+++d    i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r+    t+  + +
  CCG012997.1  59 LPAGVKFDPTDQELL-EHLEGKVKSDIrkvhplID--EFIPTIDgengICYTHPEKLP-GVSKDGLIRHFFHRPSKAYTTGTRKRRKvhtdTEggETR 152
                  799************.99*****998855543322..23444444445**********.555555677******************745553344667 PP

          NAM  83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                  W++tgk+++vl+ +g+++g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  CCG012997.1 153 WHKTGKTRPVLV-GGKVKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 199
                  ************.9*************6657999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-3953218IPR003441NAC domain
PROSITE profilePS5100533.89259218IPR003441NAC domain
PfamPF023655.5E-1660199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MTWCNDCNDV QTIERSSPPP CNASVIVQRH KECLIRSCPS CGHQIKCQDQ ARIPDLPGLP  60
AGVKFDPTDQ ELLEHLEGKV KSDIRKVHPL IDEFIPTIDG ENGICYTHPE KLPGVSKDGL  120
IRHFFHRPSK AYTTGTRKRR KVHTDTEGGE TRWHKTGKTR PVLVGGKVKG YKKILVLYTN  180
YGKQRKPEKT NWVMHQYHLG NNEEEKDGEL VVSKVFYQTQ PRQCGSLIKD SVYVPSKLKV  240
QCSGHEGSNL KNSTTLEYYH PSSFISFDQS GQNRSTNPNP PQQLLSHFAV HDGSSFIP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707930.0AB970793.1 Populus nigra PniNAC122 mRNA for NAC transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043628.10.0PREDICTED: NAC domain-containing protein 8-like
SwissprotO494591e-130NAC73_ARATH; NAC domain-containing protein 73
TrEMBLB9MYC70.0B9MYC7_POPTR; NAC family protein
STRINGPOPTR_0017s04800.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-118NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]