PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG012862.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 355aa    MW: 39357.1 Da    PI: 9.3128
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG012862.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.84.4e-53151421128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++l++ + 
  CCG012862.1  15 LPPGFRFHPTDEELVVHYLKKKAASVPLPV-TIIAEIDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAAPSGYWKATGTDKPILTSnGA 111
                  79****************************.89***************8888999*************************************998567 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  ++vg+kk Lvfy g+ pkg kt+W+mheyrl
  CCG012862.1 112 QKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142
                  78***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-649176IPR003441NAC domain
PROSITE profilePS5100561.87115176IPR003441NAC domain
PfamPF023657.7E-2816142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MESTDSSSGS QHPRLPPGFR FHPTDEELVV HYLKKKAASV PLPVTIIAEI DLYKFDPWEL  60
PSKATFGEQE WYFFSPRDRK YPNGARPNRA APSGYWKATG TDKPILTSNG AQKVGVKKAL  120
VFYGGKPPKG IKTNWIMHEY RLINNNPSSK PPGDSANKKG GSLRLDDWVL CRIYKKNNPQ  180
RQMDQMEEED SIEGMFATLP STSSNKNPKH PSVSKPAGYA SLLENEDTFF EGILTGDGMQ  240
NSSISQLPSS SLRPNMSMTS VSTNTLSEKR SLPYHQYWNE TTGLPMGLAT SSAKRFHGDL  300
NSGITGTQED NNSFVSLLNQ FPQSTPLVHP STLHGSLGDG VLRQTFQLSS LNWNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-761517820170NAC domain-containing protein 19
3swm_B5e-761517820170NAC domain-containing protein 19
3swm_C5e-761517820170NAC domain-containing protein 19
3swm_D5e-761517820170NAC domain-containing protein 19
3swp_A5e-761517820170NAC domain-containing protein 19
3swp_B5e-761517820170NAC domain-containing protein 19
3swp_C5e-761517820170NAC domain-containing protein 19
3swp_D5e-761517820170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753073e-99KC775307.1 Jatropha curcas NAC transcription factor 029 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047846.10.0PREDICTED: NAC transcription factor 25-like
SwissprotQ8GY421e-110NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A2K1YFN30.0A0A2K1YFN3_POPTR; Uncharacterized protein
STRINGPOPTR_0011s04650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16233498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-112NAC domain containing protein 25