PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG012310.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 424aa MW: 46097.2 Da PI: 7.6602

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG012310.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.3	3.7e-05	314	352	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq CCG012310.1 314 RKEKLGDRIAALQQLVAPF-----GKTDTASVLLEAIGYIKFLQ 352 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.433	302	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.81E-6	312	356	No hit	No description
SuperFamily	SSF47459	1.23E-10	312	364	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0023	313	357	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-9	316	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MESANLHHQH QLQDQFVGSS SLTTATPSSY AEAGSAHAWT QTITLNSDIS NPSYNGVIFN 60 QRQKNESPIS SFNSTMFQDL GFHYWNNNAG NFSSHSAYDL QLSKIKEGLS SSDSFPKFTE 120 MLNSPSSTIE DPHVSSLSYI KDELKDLSLS VLETISSGFP INGHDQFSPR EISSSHHNCS 180 SFGSATPSRG SFSQIYPSIN ISNLNQPSSP LISGSFNMNS QALDLLTSTR FSGSFPLPAS 240 LDPLDMFKDS LSFGLDSIQQ SNQRPSRSPR KISSTNEITE AKRPNNSMME ATQAAAPKKS 300 RLESRSPCPP FKVRKEKLGD RIAALQQLVA PFGKTDTASV LLEAIGYIKF LQNQVETLSV 360 PYMKSSRNKT SRSIQSASNS GGEESKRDLR SRGLCLVPLS CMSYVTTDGG GGGIWPLPNF 420 GGGT

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MESANLHHQH QLQDQFVGSS SLTTATPSSY AEAGSAHAWT QTITLNSDIS NPSYNGVIFN  60
QRQKNESPIS SFNSTMFQDL GFHYWNNNAG NFSSHSAYDL QLSKIKEGLS SSDSFPKFTE  120
MLNSPSSTIE DPHVSSLSYI KDELKDLSLS VLETISSGFP INGHDQFSPR EISSSHHNCS  180
SFGSATPSRG SFSQIYPSIN ISNLNQPSSP LISGSFNMNS QALDLLTSTR FSGSFPLPAS  240
LDPLDMFKDS LSFGLDSIQQ SNQRPSRSPR KISSTNEITE AKRPNNSMME ATQAAAPKKS  300
RLESRSPCPP FKVRKEKLGD RIAALQQLVA PFGKTDTASV LLEAIGYIKF LQNQVETLSV  360
PYMKSSRNKT SRSIQSASNS GGEESKRDLR SRGLCLVPLS CMSYVTTDGG GGGIWPLPNF  420
GGGT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011048801.1	0.0	PREDICTED: transcription factor bHLH110-like isoform X1
Swissprot	Q9SFZ3	5e-77	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A3N7F5W2	0.0	A0A3N7F5W2_POPTR; Uncharacterized protein
STRING	POPTR_0005s25240.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4045	32	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	1e-79	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]