PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG012118.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

LBD

Protein Properties

Length: 249aa MW: 27970.3 Da PI: 7.8741

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG012118.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	116.5	1.6e-36	16	108	1	93
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCa+Ck++r++Ca+dCvlapyfpae++++f++vhk+FG+snv+kl+k++++e+++++++sl++eA +r++dPv G++g ++k+q++le k + CCG012118.1 16 ACASCKHQRKRCAEDCVLAPYFPAERMQEFQAVHKVFGVSNVIKLVKDVDKERQRETADSLAWEASCRQDDPVLGCYGKFKKIQEELELYKMQ 108 7**************************************************************************************988866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.631	15	116	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.8E-35	16	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MQRGRDNNSR VAMHQACASC KHQRKRCAED CVLAPYFPAE RMQEFQAVHK VFGVSNVIKL 60 VKDVDKERQR ETADSLAWEA SCRQDDPVLG CYGKFKKIQE ELELYKMQPP LPNQNILRQR 120 QAGAAYNKQP LLLAWNAAHG INNRGNGIGG GLANNNMANY GHDNSSLIFD SVPHSFPWQY 180 VRGQDKSNPE RDATSLLLPI HPSPPPPPQH PFSVNGFNQQ QQYYHPGQFG SLNGNPMDST 240 LFMGEEDGP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-21	17	118	12	113	LOB family transfactor Ramosa2.1
5ly0_B	1e-21	17	118	12	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC213156	0.0	AC213156.1 Populus trichocarpa clone POP076-I18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011037427.1	1e-170	PREDICTED: LOB domain-containing protein 2
TrEMBL	A0A2K1Y4S9	1e-149	A0A2K1Y4S9_POPTR; Uncharacterized protein
TrEMBL	A0A3N7FWJ1	1e-149	A0A3N7FWJ1_POPTR; Uncharacterized protein
STRING	POPTR_0013s12770.1	1e-132	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12722	25	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	8e-41	LOB domain-containing protein 2