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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | CCG012079.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family | bHLH | ||||||||
| Protein Properties | Length: 221aa MW: 24817.2 Da PI: 4.9112 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 27.9 | 4.4e-09 | 22 | 72 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
+ + +E++RR+++++ +++L +llP+ + ++ + +A+ +IksL+
CCG012079.1 22 TERKVIEKNRRNQMKTLYSKLNSLLPNqN---FKEPQPLPDQIDEAISHIKSLE 72
56789**********************66...888899999999*******996 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| CDD | cd00083 | 3.22E-5 | 18 | 76 | No hit | No description |
| PROSITE profile | PS50888 | 10.918 | 19 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 4.45E-10 | 20 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 9.3E-10 | 21 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 1.7E-5 | 23 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 9.7E-4 | 25 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0050832 | Biological Process | defense response to fungus | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 221 aa Download sequence Send to blast |
MVENFGGTVI MESSGNISST KTERKVIEKN RRNQMKTLYS KLNSLLPNQN FKEPQPLPDQ 60 IDEAISHIKS LEEKLKKARE KKEGLTSSRK RSYTCTYDPT PIAAPKSPQL KIQELGSALE 120 IVLTSGIDNQ FLFYEIIRIL HEEGVEVVSA NFQVLGDSIF QVLHAQMKES DNGFGAAKVT 180 ERLNMAINGS TSEIELDLEL WDFEIHPGIT GELLTGLEYE T |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011037352.1 | 1e-162 | PREDICTED: transcription factor bHLH118-like | ||||
| TrEMBL | A0A3N7FWG9 | 1e-141 | A0A3N7FWG9_POPTR; Uncharacterized protein | ||||
| STRING | POPTR_0013s13340.1 | 1e-142 | (Populus trichocarpa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF906 | 34 | 98 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G20970.1 | 5e-31 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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