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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | CCG012004.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family | bHLH | ||||||||
| Protein Properties | Length: 179aa MW: 20429.7 Da PI: 8.9548 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 32.4 | 1.7e-10 | 13 | 64 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
+ +Er+RR ++++ +L +llP+ ++psk s + Le+A YIk+L+
CCG012004.1 13 RKTVERNRRIHMKDLCWKLASLLPPHLSEPSKDmQSQQDQLELAACYIKQLR 64
6789*********************558898888****************95 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| CDD | cd00083 | 2.35E-4 | 6 | 68 | No hit | No description |
| PROSITE profile | PS50888 | 10.22 | 8 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 8.51E-10 | 10 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 7.1E-9 | 10 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 0.004 | 14 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 3.4E-7 | 14 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 179 aa Download sequence Send to blast |
MMKKNSETSR LDRKTVERNR RIHMKDLCWK LASLLPPHLS EPSKDMQSQQ DQLELAACYI 60 KQLRERVEGL KRVKEEQAIT TTRTSSSAMT SIMIGLRLPM VELRDFGSTI EVVLISGLNK 120 NFMFYEVINV LSEEGAEVVS ASYSTVGDKV FHTIHAQVRI SRVGVQTSRV CERLQELIC |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011044317.1 | 1e-130 | PREDICTED: uncharacterized protein LOC105139543 | ||||
| Refseq | XP_011044318.1 | 1e-130 | PREDICTED: uncharacterized protein LOC105139543 | ||||
| TrEMBL | B9I387 | 1e-118 | B9I387_POPTR; Uncharacterized protein | ||||
| STRING | POPTR_0012s08050.1 | 1e-119 | (Populus trichocarpa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF6849 | 21 | 41 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G20970.1 | 8e-30 | bHLH family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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