PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011957.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 767aa    MW: 84546.2 Da    PI: 7.0031
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011957.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.56.1e-24117218199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +
  CCG011957.1 117 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQ 210
                  99*****************************8544444..48************************************************..889999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++++r+
  CCG011957.1 211 LLLGIRRA 218
                  9****997 PP
2Auxin_resp118.17.3e-39243324181
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrs 81 
                  aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m+fete+ss rr++Gt++g+sdld vrWpnS+Wrs
  CCG011957.1 243 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYLKAVYyTRVSVGMRFRMMFETEESSVRRYMGTITGISDLDAVRWPNSQWRS 324
                  79*********************************989*******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-49102246IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-42109232IPR015300DNA-binding pseudobarrel domain
CDDcd100177.94E-22116217No hitNo description
SMARTSM010196.6E-24117219IPR003340B3 DNA binding domain
PfamPF023623.4E-22117218IPR003340B3 DNA binding domain
PROSITE profilePS5086312.506117219IPR003340B3 DNA binding domain
PfamPF065073.6E-34243324IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
MDFAVEKRVL NSELWHACAG PLVSLPAVGS RAVYFPQGHS EQVAASTNKE VDAQIPSYPS  60
LPAQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDA YLPADMGTPS KQPTNYFCKT  120
LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR HIFRGQPKRH  180
LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRATR PQTVMPSSVL SSDSMHLGLL  240
AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYLKAVYYT RVSVGMRFRM MFETEESSVR  300
RYMGTITGIS DLDAVRWPNS QWRSAKVGWD ESTDGERQPR VSLWEIEPLT TFPTYPSPFP  360
LRLKRPWSPG LPSFHGIKND DLGKNSSLMW LRGDGDCGVQ SLNFQGTGVS PWVQPRVDAS  420
MLGLQNDVYQ TMATAAFQEM RTLDPSKSSS ASLLQFQQHQ NLPIRSAALM QPRMLQQSPP  480
QQTFLQGVQE NKHQSQNPSQ SHLIQQQLLH HHLLDSPHQQ QQQQPFLQQQ QLADQQIPNG  540
ASATISQYAS ASQSLTPPLQ AISLCQQHSY SDSNGKPATI PVVSSLQSLL DSFPPNESSH  600
LLSLPRINPL VTSSGWPSKR AAVESLTSSG APQCMVTQVE QLGPLQTSIT PSSVSLPPFP  660
GRECSIDQDG GTDQQNHLLF GVNIEPSSLL LQNGMSSLRG VGSDSDSTTI PFSSNYMSTA  720
GTNFSLNPAM TPSSCIDESC FLQSTENVSQ GNPPTRTFVK VTLHFAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-164434745388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047524.10.0PREDICTED: auxin response factor 6-like isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A1L6K4480.0A0A1L6K448_POPTO; Auxin response factor
STRINGPOPTR_0001s36900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]