PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG011932.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GATA | ||||||||
Protein Properties | Length: 256aa MW: 28727.2 Da PI: 7.9869 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.9 | 1.8e-20 | 177 | 211 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+ kTp+WR gpdg+ktLCnaCG++y++ +l CCG011932.1 177 CQHCGVEKTPQWRAGPDGPKTLCNACGVRYKSGRL 211 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 6.9E-18 | 171 | 221 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.585 | 171 | 207 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.9E-15 | 173 | 234 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.7E-15 | 175 | 209 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.58E-14 | 176 | 224 | No hit | No description |
Pfam | PF00320 | 2.8E-18 | 177 | 211 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 177 | 202 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MESLDTAACF MDDLLDFCSD IGEEEDGEEH QRNSKKSRRA LPSLNPNDLH PASFNVLEHS 60 LLPEFAEEDL EWLSNKDAFP TVETCFGSLS GEPGSIPKHH SPVSVLENST TSSTSNSGNS 120 SNSNIIMSSC RLRVPVKARS KRHHRHPREI QEQECWWSQE NFTRKPAESV AKLGRKCQHC 180 GVEKTPQWRA GPDGPKTLCN ACGVRYKSGR LVPEYRPANS PTFSSKLHSN SHRKVVEMRR 240 QKQMMGLLVA KPMDKG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00377 | DAP | Transfer from AT3G24050 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC149482 | 0.0 | AC149482.1 Populus trichocarpa clone Pop1-69G3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011002163.1 | 0.0 | PREDICTED: GATA transcription factor 1-like | ||||
Refseq | XP_011012220.1 | 0.0 | PREDICTED: GATA transcription factor 1-like | ||||
Swissprot | Q8LAU9 | 1e-55 | GATA1_ARATH; GATA transcription factor 1 | ||||
TrEMBL | A0A2K2BSR5 | 1e-160 | A0A2K2BSR5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s14130.1 | 1e-161 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8537 | 29 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 9e-55 | GATA transcription factor 1 |