PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011890.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 477aa    MW: 52599.9 Da    PI: 8.3576
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011890.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.73.6e-26128185259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   DgynWrKYGqK+vkgs+++rsYYrC + +C +kkkv+++ + ++vv+++Y g+Hnh+
  CCG011890.1 128 MDGYNWRKYGQKPVKGSKNSRSYYRCVHCSCYAKKKVQHCCQSGHVVDVVYIGDHNHD 185
                  5********************************************************7 PP
2WRKY88.65.3e-28330386258
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                  +Dgy+WrK GqK+ kg+ f rsYYrCts+ Cp++k+ver+a++ + ++itYeg+H+h
  CCG011890.1 330 NDGYRWRKDGQKMLKGNSFIRSYYRCTSSACPARKHVERAADEATSTTITYEGKHDH 386
                  8******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-24123187IPR003657WRKY domain
SuperFamilySSF1182901.28E-22126187IPR003657WRKY domain
SMARTSM007742.8E-25127186IPR003657WRKY domain
PROSITE profilePS5081122.332129187IPR003657WRKY domain
PfamPF031063.6E-20129185IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-27314389IPR003657WRKY domain
SuperFamilySSF1182904.84E-23324389IPR003657WRKY domain
PROSITE profilePS5081126.968324389IPR003657WRKY domain
SMARTSM007742.0E-29329388IPR003657WRKY domain
PfamPF031064.4E-22330386IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MQEQRKYHRG DSDIGFKNYD CSSFSQLLKK VMTSSNSPGF QGQNEMFQRD AQVGTKPEAD  60
RVRLEHQVEC ANTSSEALSV TPAAISVPHS AYATQKPMST CELGLVIDQQ NSHHETGLPR  120
VVMDAPFMDG YNWRKYGQKP VKGSKNSRSY YRCVHCSCYA KKKVQHCCQS GHVVDVVYIG  180
DHNHDPPHRK CIRVMSSAKP TGGSQIVDPS VQKLDGSDIS VCSADGRRSS LHVPESEQQS  240
SSSSNGNVGA KIEEKNGDES ESKRCYGPRA VEPQQNGPCG IAGTEVWEKH GAEPRLKIRI  300
KERSVAHSVP VSKKEPEIAV HIVPDEGSSN DGYRWRKDGQ KMLKGNSFIR SYYRCTSSAC  360
PARKHVERAA DEATSTTITY EGKHDHGMPV PKKRHEHDIP VPKKRHGSES SLISPAASVD  420
NACCKKNRSL SSRRPSSKCS MDSEVDIMGE KILELGGEEA LESAQTLLSI GVEFKPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20317389274WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774350.0GQ377435.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031452.10.0PREDICTED: probable WRKY transcription factor 32
TrEMBLC9DI040.0C9DI04_9ROSI; WRKY transcription factor 15
STRINGXP_002515427.11e-112(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16159610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.13e-48WRKY DNA-binding protein 32