PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011710.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 294aa    MW: 32631.1 Da    PI: 4.5111
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011710.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-193281255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++  +++++g
  CCG011710.1 32 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDTEARRIRG 81
                 69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.88E-223291IPR016177DNA-binding domain
CDDcd000184.36E-333290No hitNo description
SMARTSM003803.7E-373295IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-323291IPR001471AP2/ERF domain
PROSITE profilePS5103224.0523289IPR001471AP2/ERF domain
PfamPF008472.0E-113380IPR001471AP2/ERF domain
PRINTSPR003677.4E-123344IPR001471AP2/ERF domain
PRINTSPR003677.4E-125571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MKFTDEYCSA PVKSAEFSGQ AEKSAKRKRK NQYRGIRQRP WGKWAAEIRD PRKGVRVWLG  60
TFNTAEEAAR AYDTEARRIR GKKAKVNFPD EAPLSSSKQS IKENTRKPLP KTNSSQSFSY  120
LSNPELNYNN MGFVEEKPLV NQFGSMNSFP INGDSGMKTL ASSDSAPMCF NSDQGSNSFD  180
CDFGWGEQTP MTPESLTVLA ATPEADESLL AIPEELESYS ENAVPAEEKN GKSLSEELLV  240
FDSQLKYLQM PDAEGSSWEA SLDSFLNAET TQDGTSAMDL WSFDDFPSMA GGVY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-2231971380Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006369093.10.0ethylene-responsive transcription factor RAP2-12
TrEMBLB9N7H50.0B9N7H5_POPTR; Uncharacterized protein
STRINGPOPTR_0001s16400.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48083252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.24e-61related to AP2 12