PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

CCG011610.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 494aa MW: 53827.5 Da PI: 6.9774

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG011610.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.4	3.7e-39	100	159	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ CCG011610.1 100 PDKILPCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGSMRNVPIGAGRRKNKHL 159 7899*****************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	93	157	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-31	102	158	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.733	104	158	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	106	142	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MKGESKDPAF KLFGRKIPVP DTQFPAEPLA KGSCSEIARV ETKGPSEDSS EEPEMFSGSG 60 QGKEESQAAM RVNEAQVIAK PKEGPLETNG TDQEKVLKKP DKILPCPRCN SLDTKFCYFN 120 NYNVNQPRHF CKNCQRYWTA GGSMRNVPIG AGRRKNKHLA TQYRQILVSS DGMPIARMEN 180 SDSISHQLQS SVESGTILSP SVANGMVLKF GHEAPLCDSM ENVLNLGDQK RYVEISSVNH 240 QDNVEEPSSC GSSKTASNAW ANELRENVMQ KEQVDVPVSS NELSSPNSLP CYSVPSWVFP 300 WNPGWNNVAS MTAAQHSTGQ ACVTNTPNQV QLCPTPMLAV PSICPPNIPL QFVPASYWGC 360 MPSWTAGTRN VSLSGSNGCL SLSTSTNTSC CSGNGSPTLG KHSRDSKFME EEKAEKCILV 420 PKTLRIDDPS EASKSPLWAA LGLKPDQKDP ASKGTIFKNF ETKAECYRHV SDITHVMEAN 480 PAALSRSHTF QESG

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MKGESKDPAF KLFGRKIPVP DTQFPAEPLA KGSCSEIARV ETKGPSEDSS EEPEMFSGSG  60
QGKEESQAAM RVNEAQVIAK PKEGPLETNG TDQEKVLKKP DKILPCPRCN SLDTKFCYFN  120
NYNVNQPRHF CKNCQRYWTA GGSMRNVPIG AGRRKNKHLA TQYRQILVSS DGMPIARMEN  180
SDSISHQLQS SVESGTILSP SVANGMVLKF GHEAPLCDSM ENVLNLGDQK RYVEISSVNH  240
QDNVEEPSSC GSSKTASNAW ANELRENVMQ KEQVDVPVSS NELSSPNSLP CYSVPSWVFP  300
WNPGWNNVAS MTAAQHSTGQ ACVTNTPNQV QLCPTPMLAV PSICPPNIPL QFVPASYWGC  360
MPSWTAGTRN VSLSGSNGCL SLSTSTNTSC CSGNGSPTLG KHSRDSKFME EEKAEKCILV  420
PKTLRIDDPS EASKSPLWAA LGLKPDQKDP ASKGTIFKNF ETKAECYRHV SDITHVMEAN  480
PAALSRSHTF QESG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011047035.1	0.0	PREDICTED: cyclic dof factor 3-like
Refseq	XP_011047036.1	0.0	PREDICTED: cyclic dof factor 3-like
TrEMBL	A0A2K1Y217	0.0	A0A2K1Y217_POPTR; Uncharacterized protein
STRING	POPTR_0013s06290.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	6e-62	cycling DOF factor 2