PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011426.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 586aa    MW: 65896.6 Da    PI: 5.5098
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011426.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.81.7e-2964148187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW++qe+laL+++r+ m+  +r+++lk+plWeevs+k++e g+ rs+k+Ckek+enl k++k++keg+ ++++++  t+++fd+lea
  CCG011426.1  64 RWPRQETLALLKIRSAMDAVFRDSSLKGPLWEEVSRKLAELGYDRSAKKCKEKFENLYKYHKRTKEGRTGKSEGK--TYKFFDELEA 148
                  8********************************************************************975544..6******985 PP

2trihelix100.91e-31404489187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW+k ev+aLi +r +++ ++++  +k+plWe++s+ m++ g++rs+k Ckekwen+nk++kk+ke+++kr +++s+tcpyfdql+a
  CCG011426.1 404 RWPKVEVQALISLRADLDIKYQEHGAKGPLWEDISAGMQKLGYNRSAKSCKEKWENINKYFKKVKESNRKR-PGDSKTCPYFDQLDA 489
                  8*********************************************************************8.9************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.22457121IPR017877Myb-like domain
SMARTSM007170.06761123IPR001005SANT/Myb domain
CDDcd122037.83E-2663128No hitNo description
PfamPF138374.2E-2063148No hitNo description
SMARTSM007177.1E-5401463IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-4403460IPR009057Homeodomain-like
PfamPF138371.2E-22403490No hitNo description
CDDcd122031.71E-25403468No hitNo description
PROSITE profilePS500907.178403461IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MLGDSSVLAS PSDVATTATR VVPEGGEVCE VGGAGGFGSN STEEDKNMGG DILEGDRMNY  60
GANRWPRQET LALLKIRSAM DAVFRDSSLK GPLWEEVSRK LAELGYDRSA KKCKEKFENL  120
YKYHKRTKEG RTGKSEGKTY KFFDELEAFQ NHHSYSAQPP TILAPPLPPP KAQTPTATTA  180
TLPWTNSPAI VSHVTAQSTT NPIDILSQGI ATPTTIHTIS PMPLSSNSMN PSQDTLPSSL  240
QNLATHFFSS STSSSTASDE KLERSRKRKR ERNWKDFFLR LTRDVIKKQE DLQKKFLETV  300
DKCEHERMAR EDAWRMKEMA RMNRQHEILI QERSTAVAKD AAVFAFLQKI SGQQNSTETQ  360
AIPQPKLTPP QPRPPVPTSL EPVTNLVVSK WDNGENVTVS SSSRWPKVEV QALISLRADL  420
DIKYQEHGAK GPLWEDISAG MQKLGYNRSA KSCKEKWENI NKYFKKVKES NRKRPGDSKT  480
CPYFDQLDAL YKEKNKMESR VSTGYAVKPI STMEPLMVRP EQQCPFEQAN QPETNIEDNE  540
RDINIDHNIE EEEEDDDDMD DDTEEEDEGV GFEVVANRPA SLTNGE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011044213.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-144TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLB9H7S10.0B9H7S1_POPTR; Uncharacterized protein
STRINGPOPTR_0005s21420.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.17e-84Trihelix family protein