PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG011426.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Trihelix | ||||||||
Protein Properties | Length: 586aa MW: 65896.6 Da PI: 5.5098 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 93.8 | 1.7e-29 | 64 | 148 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+ m+ +r+++lk+plWeevs+k++e g+ rs+k+Ckek+enl k++k++keg+ ++++++ t+++fd+lea CCG011426.1 64 RWPRQETLALLKIRSAMDAVFRDSSLKGPLWEEVSRKLAELGYDRSAKKCKEKFENLYKYHKRTKEGRTGKSEGK--TYKFFDELEA 148 8********************************************************************975544..6******985 PP | |||||||
2 | trihelix | 100.9 | 1e-31 | 404 | 489 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi +r +++ ++++ +k+plWe++s+ m++ g++rs+k Ckekwen+nk++kk+ke+++kr +++s+tcpyfdql+a CCG011426.1 404 RWPKVEVQALISLRADLDIKYQEHGAKGPLWEDISAGMQKLGYNRSAKSCKEKWENINKYFKKVKESNRKR-PGDSKTCPYFDQLDA 489 8*********************************************************************8.9************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.224 | 57 | 121 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.067 | 61 | 123 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 7.83E-26 | 63 | 128 | No hit | No description |
Pfam | PF13837 | 4.2E-20 | 63 | 148 | No hit | No description |
SMART | SM00717 | 7.1E-5 | 401 | 463 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-4 | 403 | 460 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 1.2E-22 | 403 | 490 | No hit | No description |
CDD | cd12203 | 1.71E-25 | 403 | 468 | No hit | No description |
PROSITE profile | PS50090 | 7.178 | 403 | 461 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 586 aa Download sequence Send to blast |
MLGDSSVLAS PSDVATTATR VVPEGGEVCE VGGAGGFGSN STEEDKNMGG DILEGDRMNY 60 GANRWPRQET LALLKIRSAM DAVFRDSSLK GPLWEEVSRK LAELGYDRSA KKCKEKFENL 120 YKYHKRTKEG RTGKSEGKTY KFFDELEAFQ NHHSYSAQPP TILAPPLPPP KAQTPTATTA 180 TLPWTNSPAI VSHVTAQSTT NPIDILSQGI ATPTTIHTIS PMPLSSNSMN PSQDTLPSSL 240 QNLATHFFSS STSSSTASDE KLERSRKRKR ERNWKDFFLR LTRDVIKKQE DLQKKFLETV 300 DKCEHERMAR EDAWRMKEMA RMNRQHEILI QERSTAVAKD AAVFAFLQKI SGQQNSTETQ 360 AIPQPKLTPP QPRPPVPTSL EPVTNLVVSK WDNGENVTVS SSSRWPKVEV QALISLRADL 420 DIKYQEHGAK GPLWEDISAG MQKLGYNRSA KSCKEKWENI NKYFKKVKES NRKRPGDSKT 480 CPYFDQLDAL YKEKNKMESR VSTGYAVKPI STMEPLMVRP EQQCPFEQAN QPETNIEDNE 540 RDINIDHNIE EEEEDDDDMD DDTEEEDEGV GFEVVANRPA SLTNGE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00244 | DAP | Transfer from AT1G76890 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011044213.1 | 0.0 | PREDICTED: trihelix transcription factor GT-2-like | ||||
Swissprot | Q39117 | 1e-144 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | B9H7S1 | 0.0 | B9H7S1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s21420.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 7e-84 | Trihelix family protein |