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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG011338.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 285aa MW: 32335 Da PI: 6.053 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.6 | 4e-20 | 28 | 78 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+WvAeIr+p++ r+r +lg+f taeeAa a+++a+++l+g CCG011338.1 28 CDYRGVRQRT-WGKWVAEIREPKK---RARLWLGSFATAEEAAMAYDEAARRLYG 78 68*****999.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.95E-32 | 28 | 88 | No hit | No description |
Pfam | PF00847 | 1.0E-13 | 28 | 78 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-38 | 29 | 92 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.537 | 29 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-10 | 30 | 41 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-30 | 30 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.86E-21 | 30 | 87 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.4E-10 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MENCGKYPLK PWKKGPTRGK GGPQNAMCDY RGVRQRTWGK WVAEIREPKK RARLWLGSFA 60 TAEEAAMAYD EAARRLYGPS AYLNLPHLQS NSSPPNKSQK FKWIPSNNFI STFPSCGLLN 120 IHAQPSVHVI HQRLQELKNN RPINQSSVAS SSSSSESRTE VIVGDENHVA NVSAAEKDEE 180 ISSEKMPLTN RDEKPQIDLN EFLQQLGILK EKNQPDNNDV DEHFMDPESS QKDQNELTVL 240 AEKSFDWDSL IEMHGIADHH GEESNSFPVY DIQKELAFPT SIWNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-19 | 30 | 86 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00411 | DAP | Transfer from AT3G57600 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182686 | 0.0 | AC182686.2 Populus trichocarpa clone Pop1-37M17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011020328.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2F | ||||
Swissprot | Q9SVX5 | 9e-91 | DRE2F_ARATH; Dehydration-responsive element-binding protein 2F | ||||
TrEMBL | A0A2K1ZXA5 | 0.0 | A0A2K1ZXA5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s05320.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5477 | 31 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57600.1 | 6e-80 | ERF family protein |
Publications ? help Back to Top | |||
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