PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG011315.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 472aa MW: 52458.6 Da PI: 5.3488

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG011315.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.5	5.7e-09	187	234	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L+el+P + +k a +L + +++++sLq CCG011315.1 187 SHSLAERARREKINQRMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 234 8*************************9....888999999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.11E-15	181	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.60E-8	181	238	No hit	No description
PROSITE profile	PS50888	14.672	183	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-14	183	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-6	187	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.5E-8	189	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MDLTTASGAR SGPELDETGP DSFHLGEDIR HLIAAPSENA SSFTALLELP ANQAVELLHL 60 DSGKKQYPNL TFPSNTSAIF SVFNGGSNST DSSPLPSNSS SKDLEKASAI KREPFETGSY 120 LDSSHPLVSD PTVDNSAPNA RPSSKRKERE KKVKAASKRN KTESSQQEED MLPYVHVRAR 180 RGQATDSHSL AERARREKIN QRMKLLQELV PGCNKISGTA LVLDEIINHV QSLQCQVEFL 240 SMRLAAVNPR IDFNLDSMLA AEGGSLIDSN FPGMVMPLMW PEAQVNRNRH QFQQHWQFDA 300 LHQPIWGREE DTHNFITPEN SLLSYDSSAN SVLQNSLIDM HSKCGNLDYS TKIFNNMPER 360 TVISWNAMLV GKISHGGLDD KGLEIVAEMV EGNDVVDAEI EHYGRACRVH SNTNFDEFVG 420 RHLVEIEPEN AGNCVIPSNL YASAERMEDV RNVKELMMEK ASCERGAWKK LD

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MDLTTASGAR SGPELDETGP DSFHLGEDIR HLIAAPSENA SSFTALLELP ANQAVELLHL  60
DSGKKQYPNL TFPSNTSAIF SVFNGGSNST DSSPLPSNSS SKDLEKASAI KREPFETGSY  120
LDSSHPLVSD PTVDNSAPNA RPSSKRKERE KKVKAASKRN KTESSQQEED MLPYVHVRAR  180
RGQATDSHSL AERARREKIN QRMKLLQELV PGCNKISGTA LVLDEIINHV QSLQCQVEFL  240
SMRLAAVNPR IDFNLDSMLA AEGGSLIDSN FPGMVMPLMW PEAQVNRNRH QFQQHWQFDA  300
LHQPIWGREE DTHNFITPEN SLLSYDSSAN SVLQNSLIDM HSKCGNLDYS TKIFNNMPER  360
TVISWNAMLV GKISHGGLDD KGLEIVAEMV EGNDVVDAEI EHYGRACRVH SNTNFDEFVG  420
RHLVEIEPEN AGNCVIPSNL YASAERMEDV RNVKELMMEK ASCERGAWKK LD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011020295.1	0.0	PREDICTED: transcription factor bHLH48-like isoform X2
Refseq	XP_011020297.1	0.0	PREDICTED: transcription factor bHLH48-like isoform X2
Swissprot	Q3EAI1	3e-84	BH060_ARATH; Transcription factor bHLH60
TrEMBL	A0A2K1ZXD7	0.0	A0A2K1ZXD7_POPTR; Uncharacterized protein
STRING	POPTR_0006s05600.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4985	29	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	9e-89	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]