PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG011314.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 489aa MW: 54722.9 Da PI: 6.989

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG011314.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23	1.5e-07	187	213	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++iN+++ L+el+P + CCG011314.1 187 SHSLAERARREKINQRMKLLQELVPGC 213 8************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.95E-5	181	215	No hit	No description
SuperFamily	SSF47459	7.08E-11	183	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.575	183	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-10	187	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.4E-5	187	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.08E-11	296	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-10	298	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MDLTTASGAR SGPELDETGP DSFHLGEDIR HLIAAPSENA SSFTALLELP ANQAVELLHL 60 DSGKKQYPNL TFPSNTSAIF SVFNGGSNST DSSPLPSNSS SKDLEKASAI KREPFETGSY 120 LDSSHPLVSD PTVDNSAPNA RPSSKRKERE KKVKAASKRN KTESSQQEED MLPYVHVRAR 180 RGQATDSHSL AERARREKIN QRMKLLQELV PGCNKRCLLR IVWSFHRFWD RDSVEIMPCS 240 NKMIRRPFKV FSKIDLKVYG NDRNALMGLD QKFIVWKLAG ACFLFKLQLV LAIESYLSMQ 300 ISGTALVLDE IINHVQSLQC QVEFLSMRLA AVNPRIDFNL DSMLAAEGGS LIDSNFPGMV 360 MPLMWPEAQV NRNRHQFQQH WQFDALHQPI WGREEDTHNF ITPENSLLSY DSSANSANSE 420 YGVILLGSKG GLLSNLRFSG MNLTCRRWAN YPGGLVDYRP GCQDVVNHGA AGIIMEYIEG 480 FEVENVNIR

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MDLTTASGAR SGPELDETGP DSFHLGEDIR HLIAAPSENA SSFTALLELP ANQAVELLHL  60
DSGKKQYPNL TFPSNTSAIF SVFNGGSNST DSSPLPSNSS SKDLEKASAI KREPFETGSY  120
LDSSHPLVSD PTVDNSAPNA RPSSKRKERE KKVKAASKRN KTESSQQEED MLPYVHVRAR  180
RGQATDSHSL AERARREKIN QRMKLLQELV PGCNKRCLLR IVWSFHRFWD RDSVEIMPCS  240
NKMIRRPFKV FSKIDLKVYG NDRNALMGLD QKFIVWKLAG ACFLFKLQLV LAIESYLSMQ  300
ISGTALVLDE IINHVQSLQC QVEFLSMRLA AVNPRIDFNL DSMLAAEGGS LIDSNFPGMV  360
MPLMWPEAQV NRNRHQFQQH WQFDALHQPI WGREEDTHNF ITPENSLLSY DSSANSANSE  420
YGVILLGSKG GLLSNLRFSG MNLTCRRWAN YPGGLVDYRP GCQDVVNHGA AGIIMEYIEG  480
FEVENVNIR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011020295.1	1e-131	PREDICTED: transcription factor bHLH48-like isoform X2
Refseq	XP_011020297.1	1e-131	PREDICTED: transcription factor bHLH48-like isoform X2
Swissprot	Q3EAI1	1e-85	BH060_ARATH; Transcription factor bHLH60
TrEMBL	A0A438EGX9	1e-119	A0A438EGX9_VITVI; Transcription factor bHLH60
STRING	XP_010111436.1	1e-116	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4985	29	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.1	1e-80	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]