PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG011311.2

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 355aa MW: 38988.3 Da PI: 9.6012

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG011311.2	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37	6.3e-12	283	328	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k s a++L +Av YIk+Lq CCG011311.2 283 SIAERVRRTRISERMRKLQELVPNM----DKQTSTADMLDLAVVYIKDLQ 328 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.869	277	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.06E-15	280	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.94E-11	281	330	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.9E-13	282	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-12	283	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.7E-9	283	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048573	Biological Process	photoperiodism, flowering
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MDSSSSHNSS SGSLRFRSAP SSLLANFTDN GVDNDSVLNF QQFEDKSAAR VREEAVNYSS 60 LPRSYPGLPP HYPRQSSATS SSAMDSSYGL IGSISMGRHE QVEKVDSNPA RQNSSPAGLY 120 GNLPVQNGVG NYSGLNGTNG EASRRLHSQL SFSSRVPSSL GLLSQISEIG SESMEAGSPD 180 SGKLTSVSVD GRFYSSHGFP YGSWNDSHLS ENFSSMKREQ ENGNLFSNAQ NGDLGNRAHV 240 LSHRLSLPKT AIEMVAMEKF LHFQDSVPCK IRAKRGCATH PRSIAERVRR TRISERMRKL 300 QELVPNMDKQ TSTADMLDLA VVYIKDLQKQ YKTLSDNRAN CKCLSKQKPV QNRIV

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MDSSSSHNSS SGSLRFRSAP SSLLANFTDN GVDNDSVLNF QQFEDKSAAR VREEAVNYSS  60
LPRSYPGLPP HYPRQSSATS SSAMDSSYGL IGSISMGRHE QVEKVDSNPA RQNSSPAGLY  120
GNLPVQNGVG NYSGLNGTNG EASRRLHSQL SFSSRVPSSL GLLSQISEIG SESMEAGSPD  180
SGKLTSVSVD GRFYSSHGFP YGSWNDSHLS ENFSSMKREQ ENGNLFSNAQ NGDLGNRAHV  240
LSHRLSLPKT AIEMVAMEKF LHFQDSVPCK IRAKRGCATH PRSIAERVRR TRISERMRKL  300
QELVPNMDKQ TSTADMLDLA VVYIKDLQKQ YKTLSDNRAN CKCLSKQKPV QNRIV

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00308	DAP	Transfer from AT2G42280	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006381041.1	0.0	transcription factor bHLH130 isoform X1
Swissprot	Q66GR3	1e-101	BH130_ARATH; Transcription factor bHLH130
TrEMBL	B9N6W0	0.0	B9N6W0_POPTR; BHLH family protein
STRING	POPTR_0006s05640.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5177	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	2e-95	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]