PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG011260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 292aa MW: 31888.3 Da PI: 7.6617 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00019 | 109 | 131 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H CCG011260.1 109 FPCNFCKREFSTSQALGGHQNAH 131 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.1E-4 | 104 | 135 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.78E-6 | 105 | 136 | No hit | No description |
Pfam | PF13912 | 1.2E-5 | 108 | 133 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.406 | 109 | 136 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 111 | 131 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
METVGTERCP SEGSSISATS EGTPHRDGSE LDQTEMVNTN MKEKVVQGSE PALLPKSSAR 60 VLLDLKLSRD NSIRGSKLEF NLFSPMNVGS SHAKESTDET LKQTESRVFP CNFCKREFST 120 SQALGGHQNA HKQERTLAKR RQEMDVGALV HLPYYPYSSL STNPYYGSLN RSLGVRLDSL 180 IHKTSPPYSW TSPIGLRYGA HGGWSGQTTM NTQPSNGRLT TESLDAFSGG FGISSSSSSS 240 RFEDNLLRNF GSPPSSNSVA VNKPPGTDHM RQTDLPKSYQ TDDSGLDLSL KL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011020213.1 | 0.0 | PREDICTED: zinc finger protein 3-like | ||||
TrEMBL | A0A2K1ZXT9 | 0.0 | A0A2K1ZXT9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s06260.1 | 1e-173 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1822 | 30 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01860.1 | 5e-24 | C2H2 family protein |