PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG011166.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 238aa MW: 27410.1 Da PI: 6.1786

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG011166.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.1	0.00036	74	94	35	55
TS-STCHHHHHHHHHHHHHHH CS HLH 35 skKlsKaeiLekAveYIksLq 55 + l+Ka+i + A+eYI++Lq CCG011166.1 74 RGTLDKASIIKDAIEYIQDLQ 94 4679****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-10	48	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.89E-6	52	98	No hit	No description
SMART	SM00353	0.0011	56	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-7	64	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MDIIENIGEY QNYWETNWFW NEELDYSWAT NQQSNLGCNA PSLPEGTGSP IRAKNIDSKR 60 KKRKELNDKL LALRGTLDKA SIIKDAIEYI QDLQEQERIL QAEIREHESK RLMKHPDSGI 120 EQELPDLLRS KRTRYDQIYH HSLGRSTCPV QVHELAITSM GEKTLLVSFE CNKTTDAMSR 180 IYEVFESLKL KIITANATAL SGMIKTTVVI EVDEEEKEHL KIKIERAVSA LRSPHAVQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	59	64	RKKRKE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024458299.1	1e-149	transcription factor bHLH35 isoform X1
TrEMBL	A0A2K1ZYE4	1e-147	A0A2K1ZYE4_POPTR; Uncharacterized protein
STRING	POPTR_0006s07430.1	1e-145	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF39354	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.1	6e-46	bHLH family protein