PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011165.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 248aa    MW: 28403.4 Da    PI: 4.9207
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011165.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.7e-135799754
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                   Er+RR+r+N++++ Lr ++P+      +K++Ka+i + A++YI++L
  CCG011165.1 57 VSERNRRKRLNERLFALRAVVPNI-----TKMDKASIIKDAIDYIQEL 99
                 57*********************7.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.7045099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1751114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.01E-1353104No hitNo description
SMARTSM003534.0E-1556105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-1656114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-115799IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.84E-5170238No hitNo description
CDDcd048737.60E-4173236No hitNo description
PROSITE profilePS516719.025174246IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MESIENIGEE YQNYWETKMF LQNEEFDSWA IDEAFSGYYD SSSPDGAASS AASKNIVSER  60
NRRKRLNERL FALRAVVPNI TKMDKASIIK DAIDYIQELH EQERRIQAEI LELESVKLKK  120
DPGLNVFEQE LPVLLRSKKK KIDDRFCDFG GSKNFSRIEL LELRVAYMGE KTLVVSLTCS  180
KRTDTMVKLC EVFESLRVKI ITANITTISG RVLKTVFIEA DEEEKDNLKT RIETAIAALN  240
DPPSPMSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-1455118976Transcription factor MYC2
5gnj_B6e-1455118976Transcription factor MYC2
5gnj_E6e-1455118976Transcription factor MYC2
5gnj_F6e-1455118976Transcription factor MYC2
5gnj_G6e-1455118976Transcription factor MYC2
5gnj_I6e-1455118976Transcription factor MYC2
5gnj_M6e-1455118976Transcription factor MYC2
5gnj_N6e-1455118976Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020046.10.0PREDICTED: transcription factor bHLH35-like isoform X2
SwissprotQ2HIV93e-94BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A2K1ZYF31e-175A0A2K1ZYF3_POPTR; Uncharacterized protein
STRINGPOPTR_0006s07440.11e-145(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.19e-77bHLH family protein