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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG011120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 84aa MW: 9447.85 Da PI: 9.7906 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.9 | 2.8e-14 | 2 | 45 | 10 | 56 |
AP2 10 kkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +++g+Wv+eIr+p+ + +r++lg+++ +e+Aa+a++a +++ge CCG011120.1 2 RTWGKWVSEIRVPK----TgQRIWLGSYDAPEKAARACDAIQYCIRGE 45 46**********95....35************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.6E-17 | 1 | 58 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.94E-19 | 1 | 53 | No hit | No description |
PROSITE profile | PS51032 | 15.672 | 1 | 52 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-20 | 1 | 53 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-15 | 2 | 53 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.2E-8 | 2 | 45 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 84 aa Download sequence Send to blast |
MRTWGKWVSE IRVPKTGQRI WLGSYDAPEK AARACDAIQY CIRGECGQFN FPAERRPQLP 60 SGPVDALFKK EIKAIAFNFA SSNA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00463 | DAP | Transfer from AT4G31060 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011020355.1 | 7e-57 | PREDICTED: ethylene-responsive transcription factor ERF015-like | ||||
Swissprot | Q6NLD5 | 2e-36 | ERF15_ARATH; Ethylene-responsive transcription factor ERF015 | ||||
TrEMBL | B9HBC8 | 1e-46 | B9HBC8_POPTR; ERF family protein | ||||
STRING | POPTR_0006s08000.1 | 2e-47 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15479 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31060.1 | 8e-39 | ERF family protein |
Publications ? help Back to Top | |||
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