PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011115.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 407aa    MW: 43998.4 Da    PI: 8.2069
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011115.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.61.8e-12427226
                 -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                 k e+Cr+f+r G C+yGdrCkF H+
  CCG011115.1  4 KKEPCRNFQR-GSCQYGDRCKFLHV 27
                 99********.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010317.619229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-6329IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-10327IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-7328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-8426IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MYKKKEPCRN FQRGSCQYGD RCKFLHVTPQ QPPKSSNNPF GFGNQQTPNN NNNSFGFGNR  60
QQQQRPNGPF GPASNNSANN RPQQFKPFEN KWSRGASAPS SRQRPDNQPA NHNCADPDSC  120
KRLIAEDFEH ERPLWKLTCY GHLKDGPCDI IGDVSYEELR AAAYDDYKCG LSLQSIVEKE  180
RNLLNSKLIE FNNLLHNPNS LKPAPAGQSP FFGATANATP ATAQNTAPPS VSSFGQLGTS  240
LNMSPPAPSN IVFGQSNLPS NSSQTVSAFG TNNFLSANAS NSSQTSSAFG TTNFPSINAG  300
LLGSQLPNQA LGNSFSRNIA GFGNSGVNSI QNISSSPLSM QNSSIHPLSI SNGLNSAFNA  360
AGQATTNVQP VTMVQRETFS GDASIWLKEK WIPGEIPEEA PPEEYVF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015956.10.0PREDICTED: zinc finger CCCH domain-containing protein 16-like isoform X1
RefseqXP_011019928.10.0PREDICTED: zinc finger CCCH domain-containing protein 16-like isoform X1
TrEMBLB9HBD40.0B9HBD4_POPTR; Uncharacterized protein
STRINGPOPTR_0006s08100.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46002333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.18e-54C3H family protein